Shewanella chilikensis: GII14_03750
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Entry
GII14_03750 CDS
T08813
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
schk
Shewanella chilikensis
Pathway
schk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII14_03750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schk03019
]
GII14_03750
Enzymes [BR:
schk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII14_03750
Messenger RNA biogenesis [BR:
schk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII14_03750
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
P-loop_SecA
HI1480
Motif
Other DBs
NCBI-ProteinID:
QIJ03377
UniProt:
A0A6G7LNL4
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All DBs
Position
complement(802216..803715)
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AA seq
499 aa
AA seq
DB search
MSFASLGLSAPILNAVAEQGYSTPSPIQAQAIPAVLLGRDVMAAAQTGTGKTAGFTLPLL
ERLNGGIRPRGNHIRALVLTPTRELAAQVAESVSLYGKHLDLRSSVVFGGVSINPQMQTL
RKGVDILVATPGRLLDLYQQNAIKFGQLEVLVLDEADRMLDMGFIHDIKKILALLPAKRQ
NLMFSATFSDDIRRLAKGLVHDPAEISVAPANSTAERVSQKLHPVDKSKKSALLTSLIKE
YKWQQVLVFTRTKHGANRLAKHLDGKGIGAAAIHGNKSQGARTKALADFKSGKVKVLVAT
DIAARGLDIDQLPQVVNFDLPNVAEDYVHRIGRTGRAGASGQAVSLVSAEEFKQLKDIEQ
LIGKTIEREIVNGFEPQEALPESRLNPNKIGPKKPKKPKKPKEGHQDGQRSGNLDKGNSN
KPANAENRHRRPAQGAKTEGSSARRKPTNAKPQGGRSQESKPQGAGKGNSGSGQPRNNQG
RTSQQRDSQARGSRQRNER
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgcctccctgggcctgtcggccccgattttgaacgctgtcgccgaacaaggt
tactccactccatcccccattcaagcccaggccattcccgcagtattgctgggccgggat
gtgatggctgccgcccagacagggacaggcaaaaccgccggcttcaccttgcctttgctg
gagcgtctcaatggtggcattcgtccgcggggcaaccatatccgcgctttggtgttgacc
cccacccgtgagctggccgctcaggtggccgaaagcgtcagtctctatggcaagcatctg
gatctgcgtagctcagtggtctttggcggtgtttccattaacccgcagatgcagaccttg
agaaaaggggtcgatatcctggtggccacaccggggcgcctgttggatctgtaccaacaa
aatgccatcaaattcggccagctggaagtgctggtgctggacgaggccgaccgcatgctg
gatatgggctttattcacgacatcaaaaaaattctggctttgctgccagccaagcggcaa
aacctgatgttcagtgccaccttctctgacgacattcgccgcctggcaaagggcttggtg
cacgatcccgccgagatctcagtggctccggccaatagcaccgccgagcgggtgagccag
aagttgcacccggtagacaagtcaaagaaatcggcgctgctgacctcgcttatcaaagag
tacaagtggcaacaggtactggtgtttacccgcaccaaacacggtgccaaccgtctggcc
aagcacctggatggcaaagggattggcgccgccgccatccacggcaacaagagccagggt
gccaggaccaaggcactggccgatttcaaaagtggcaaggtcaaggtgttggttgccaca
gatattgccgcccgcggcctggatatagatcagttgccgcaagtggttaacttcgatctg
cccaatgtggccgaagactatgtacaccgcatcggccgtaccggccgcgccggtgccagt
ggtcaggcagtgtctctggtaagtgcggaagaattcaagcaactcaaagacatagagcag
ctgatcggcaagactatcgagcgtgaaatcgtcaatggctttgaacctcaggaagccttg
ccggaatcgcgactcaacccgaacaagataggcccgaaaaagcccaagaagccgaaaaag
cccaaagagggacatcaggatggccagcgcagcggcaacctggacaaaggtaatagcaac
aagccggccaatgctgaaaaccgccatcgtcgtccggcccagggcgccaagaccgagggt
tcaagtgccagacgtaagcccacaaacgccaagcctcagggcggtcgctcccaggagagt
aagccgcaaggcgccggcaagggtaatagcggctcaggccagccgcgcaataaccagggc
agaacatcacagcaacgcgactcacaagcgcgcggctcccggcaaagaaatgagcgctaa
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