Shewanella chilikensis: GII14_08245
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Entry
GII14_08245 CDS
T08813
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
schk
Shewanella chilikensis
Pathway
schk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GII14_08245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schk03400
]
GII14_08245
Enzymes [BR:
schk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GII14_08245
DNA repair and recombination proteins [BR:
schk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GII14_08245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QIJ04146
UniProt:
A0A6G7LQP1
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All DBs
Position
complement(1779428..1782892)
Genome browser
AA seq
1154 aa
AA seq
DB search
MNKFSVLAPAGAPKAGEIRHLGLGEGVERALTLANLARQHQGVSLLVTADTPTALTLEAE
LKYLLGDTLPVWLFPDRETLPYDSFSPHQDLISQRLETLSRLPSAKHALVIVPINTLMVR
LPPKSFLSANVMLLNKGDNYSLQQMREHLVSAGYHLVGQVYEHGEFAIRGSILDIFPMGS
AEPLRIELFDDEVESIRHFDPETQLSKEPLSQVRMLPAKEFPTDERAIEGFRQRYRRYFE
VLVKEPESIYQQVSRHLMPAGIENYLPLFFDETATLFDYFAGDVQLLTLGDLQQAADAHL
TQVRNRYEDRRVDPLRPLLAPADLYLLTEQLFAAFKRWPRLQLSQVDAQKPQQLAAVSAL
PDISVNHKLKQPLQALADYIASAGRVLLSAESEGRREALMELLAKIELRPVLFPHLKAFI
DSDAQLGLIVSPLAKGCILNEPKLSIICETELFGQRISQQRRREKQRQISSDALIKNLAE
LKVGQPIVHLEHGVALYQGLETLDTGGVVAEYLKLEYAGGDKLYVPVSSLHLISRYAVAP
DESPNLNKLGNESWAKAKKKAIERIRDVAAELLDVYARRQARPGEACELDEAEYALFAQG
FPFEETVDQETSIAAVLADMQSPVAMDRLICGDVGFGKTEVAMRAAFVAVNAGKQVVVLV
PTTLLAQQHYENFKDRFADWPVQIEVMSRFRTAKEQQQVIADLANGKVDIVIGTHKLLNS
EVKFDSLGLLIIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRDLSII
ATPPAKRLAVKTFVREYDKASVREAIEREILRGGQVYYLHNNVESIEKRAEELRELLPDA
RVVVAHGQMRERELERVMSDFYHRRYNVLVCTTIIETGIDVPSANTIIIERADTFGLAQL
HQLRGRVGRSHHQAYAYLMTPHPKRMTSDARKRLEAIDALEDLGAGFMLATQDLEIRGAG
ELLGDEQSGHISKIGFSLYMEMLESAVKALKQGKEPSLAQMLNQQCEIELRIPALLPEDY
VGDVNIRLSLYKRIANCTTEAALDELKVELIDRFGLLPEATRNLMQLTLYKHQATALGLK
KLDFHARGGSVEFGDDHIIDPGFIIGLLQSQPQIYRMDGPNKLKFTLAAESSKERLEMVG
LLLQQLAQHTVGEK
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaataagttttctgtactggcgcctgcgggtgccccaaaggccggcgagatccgccat
ctcggcctcggcgaaggcgtggaacgcgcgctgaccttggccaacctcgcccgccaacat
caaggtgtcagcctgttggtgacagcggatacgccaaccgccctgacactggaagccgaa
ctcaaataccttttgggtgataccctgcccgtgtggttgtttcccgatcgggagaccctg
ccctacgacagcttttcgccgcatcaggatctgatctcccagcggctggaaaccctgtca
aggttgccaagtgccaagcacgccctggtaatagtgcccatcaacaccctgatggtgcga
ctgccgcccaagtccttcctgtcggccaatgtgatgttgctgaataagggcgacaactac
agcctgcaacagatgcgcgagcacttggtcagcgccggttatcatctggtcggtcaggtt
tatgaacatggcgaatttgccattcgcggctcgattctggatatctttcccatgggctca
gccgagccgctgcgaattgaactattcgatgatgaagtggaatcgattcgccatttcgat
cctgaaacccagctatccaaggaacccctgtcgcaggtacggatgctgccggccaaggag
ttccccacagatgaacgggccatagaaggcttccgccagcgttatcggcgctattttgaa
gtattggttaaagagcccgagtccatctatcagcaggtgagccgccatttgatgcccgcc
ggtatcgaaaactacctgcccttgttctttgatgaaaccgcgaccctattcgactatttt
gccggcgatgtgcaactgctgacgctgggcgacctgcagcaggccgccgatgcacatctg
acgcaggtacgcaatcgctatgaagacaggcgggtcgatccgctgcggcccctgctggcc
ccggccgacctatatctgttgaccgagcagctgtttgccgccttcaagcgctggccaaga
ctgcagctgagccaggtggatgcccaaaaaccgcagcaattggctgcagtaagcgcgctg
ccggatatctcggtcaaccataagctgaagcagcccttgcaggcattggccgattatatc
gcctcggcaggcagagtcctgctgagcgccgaatccgaaggccgccgcgaggcgctgatg
gagcttctggccaagatagagttgcgcccggtactgttcccgcatctcaaggcgtttatc
gactcggatgcacagctggggttaatcgtctcgccccttgccaagggctgcatactcaat
gagcccaagctcagcattatttgcgagaccgagctcttcggtcagcggatctcccagcag
agacgacgggaaaaacagcgccagatcagtagcgatgccctgattaaaaacctcgccgag
ctcaaggtcggccaacccatagtgcacctggagcacggggtcgccctctatcaagggctg
gaaaccctggataccggcggcgtggtggccgaatacctcaagctggaatacgccggtggc
gacaaactctatgtgccggtgtcgtcactgcacctcatcagccgctacgccgtggcgccg
gatgaatcccccaacctcaacaagttgggcaacgagagctgggccaaggccaagaagaag
gcgatagagcgcattcgcgatgtggccgccgagctgctggatgtttacgcccgccgtcag
gcccgccccggcgaggcctgtgaactggatgaggccgaatacgccctgttcgcccagggt
ttcccgttcgaagagacagtggatcaggaaacttccatcgccgcggttctcgccgatatg
cagtcaccggtggctatggaccgtctgatctgtggtgatgtgggctttggcaagacagaa
gtggccatgcgcgccgcctttgttgccgtcaacgccggcaagcaggtggtggtgttggtg
cccacgacgctgctggctcagcagcactatgaaaacttcaaggacaggttcgccgactgg
ccggtgcagattgaagtcatgtcccgttttcgcaccgccaaagagcagcaacaagtaatt
gccgacctggcaaacggcaaagtggatattgttatcggcacccataagctgctcaacagc
gaggtaaaatttgactccctcggcctgcttatcatagatgaggagcacaggttcggggta
cggcagaaagagaagatcaaggcgctcagggccaatgtggacattctcaccctgacggcg
accccaattccccgcaccctgaatatggccatgtccggcatgcgggatctgtcgattatc
gccaccccgccggccaaacgcctggcggtgaaaaccttcgtgcgcgaatacgacaaggcc
agtgtccgtgaggccatagagcgggagatcctccgtggcggccaggtctattacctgcac
aacaatgtggagagcatagagaaacgcgccgaggagctgcgcgagctgttgcccgatgcc
agagtggtagtagcccacggccagatgcgcgagcgcgagctggagcgggtaatgtccgat
ttctaccacagacgctacaacgtgttggtgtgtaccaccattattgaaaccggtatcgat
gtgccgagcgccaacaccatcatcatagagcgggccgacaccttcggattggcgcagctg
catcagctcaggggccgggttggccgctcccatcaccaggcttatgcctatctgatgacc
ccgcatccgaaacgcatgacctcagatgcccgcaagcgcctggaagcgattgacgccctg
gaggatctcggcgccggctttatgctggcgactcaggatctggagatccgcggcgccggt
gaattgctgggggatgagcagagcggccatatctccaagataggcttcagcctctatatg
gagatgctggagtcggcggtcaaggcgctgaaacaaggcaaggagccatccctggcacag
atgctcaaccagcagtgcgaaatcgagctgaggatcccggcgctgttgccggaagactat
gtgggcgatgtcaatattcgcctgtcgctctacaaacggatagccaactgcactacggaa
gcggcgctggatgagctcaaggtggaactgattgaccgtttcggtttgttgcctgaagcc
acccgtaacctgatgcaactgacactgtacaaacatcaggccactgcgctcggactgaaa
aaactcgattttcacgcccgcggcggcagtgtcgagtttggtgacgatcatattatcgat
cccggctttatcattggcctgttgcaatcccagccacaaatctatcgaatggatggaccg
aataagttaaagttcaccctggcggccgaaagcagtaaagaacgcctggagatggtaggt
ctgctgctgcaacaactggcacaacacactgtgggagaaaaatag
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