Shewanella chilikensis: GII14_08485
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Entry
GII14_08485 CDS
T08813
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
schk
Shewanella chilikensis
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schk03032
]
GII14_08485 (topA)
03400 DNA repair and recombination proteins [BR:
schk03400
]
GII14_08485 (topA)
Enzymes [BR:
schk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GII14_08485 (topA)
DNA replication proteins [BR:
schk03032
]
Prokaryotic type
DNA Topoisomerases
GII14_08485 (topA)
DNA repair and recombination proteins [BR:
schk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GII14_08485 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
Toprim_4
DehI
Motif
Other DBs
NCBI-ProteinID:
QIJ04188
UniProt:
A0A6G7LQW9
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Position
1831908..1834547
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AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSADANGKAKSAAEVRKMSP
EEKAKYKKVKEKKALVARMGVDPEHGWKANYQILPGKEKVVKELQALADSADEIYLATDL
DREGEAIAWHLQQVIGGDNSRYKRVVFNEITKSAIQDAFSKPSDLDNNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREAEIKAFVPEEFWDLHAQLATATDD
ALTMQVVKQNGKAFEPVNESQALAAVAALQSASYEVIGREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDNVRTMIAKEFGDKYLPDAP
IRYGSKEGAQEAHEAIRPSDVSVHAASLTDMERDAQRLYELIWRQFVACQMTPAQYDATR
LTVKAGEFELKASGRTLKFDGWTRVQSAVKRKNEEEVTLPYLAKGDKLDLKQLDPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSERLV
ENFANLMNYDFTAGMEQTLDNVAQGQLDWKQVLDGFYKDFTKQLQHAELPPEEGGMRPNQ
MVLTDITCPTCGRQMGIRTGTTGVFLGCSGYELPPKERCKTTLNLTPGEEAISESEDAET
EALRAKHRCGICGTAMDSYLLDETRKLHVCGNNPACSGYEVEKGQFKLKGYEGPVIECDR
CGSDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIPLPELKCSKSDAHFVLR
DGASGIFLAASTFPRSRETRAPLVSELVEYRELLWPKYQFLADAPVKDDEGNPALVKFSR
KTKEQYVASEVDGKATGWVAHYRDGKWFAENSKKKKAKS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggctaaagccaagactatcaacaaatat
cttggtaaagaattcatcgttaagtcgagtgtgggtcacatacgtgacttgccgacttcc
tcctccgccgacgccaacggcaaggccaaaagcgccgctgaagtgcgtaagatgtcacct
gaagaaaaggccaagtacaagaaggtgaaagagaaaaaggctctggttgcccgtatgggg
gttgatcctgagcacggctggaaagccaactaccaaattctgcctggtaaggagaaggtg
gtaaaagaactgcaagcgctggccgattctgccgatgaaatctatctcgcgacggatttg
gatagagaaggggaagcgattgcctggcacctgcagcaggtgataggcggcgacaattcg
cgttataagcgggtggtgttcaatgagatcaccaagagcgccattcaggatgctttcagc
aaacccagtgatcttgacaacaatatggtcaatgctcagcaggctcggcgattcctcgac
cgagtcgtgggctttatggtttcgccactgctgtggaaaaaggtcgccagaggcctttct
gctggacgggttcagtcggtagccgtgcgtttggtagttgagcgggaagccgaaatcaaa
gccttcgtgccggaagagttctgggatctgcatgcacaattggcgactgctaccgatgat
gctctgaccatgcaagtggttaagcaaaacggcaaagcatttgagccggtcaatgaatcc
caggcgctggctgcggtggcagcgctgcaatcggccagttatgaggtaattggccgcgaa
gacaaggctactcaaagcaagcccagcgctccctttattacctcgacactgcagcaagcc
gccagtacccgtctcggttttggagtgaagaagaccatgatgatggcccaacgtctttat
gaggcgggtcatatcacttatatgcgtaccgactctaccaatttgagccaagaagcgctg
gataacgtcagaaccatgattgccaaagagttcggcgataagtacctgccggatgcaccg
attcgttatggcagcaaagagggcgcacaagaagctcacgaagcgattcgcccttcagat
gtctctgtgcatgctgcgtcattgaccgacatggaacgtgacgctcagcggctctatgag
cttatctggcgccagtttgttgcctgtcagatgactccggctcaatatgatgccaccaga
ctcacggttaaggccggtgagtttgagttgaaggccagtggccgtacgttgaaatttgat
ggttggacccgggtacaatctgcggtcaaacgcaagaatgaagaagaagtcactctgcca
tatctggccaagggcgataaactggatctgaaacaactggatcctaaacagcactttacc
aagcctccggcgcgttacagtgaagcctctctggttaaagaattggaaaagcgcggcata
ggtcgtccctctacttacgccactattatttccaccatccaggatcgtggttatgtgaaa
gtggaaaaccgccgtttctacgccgagaagatgggtgaaattgtcagtgaacgtctggtg
gaaaactttgccaacctgatgaactatgactttaccgccggtatggaacagaccctggat
aatgtcgctcaggggcaactcgactggaaacaggtgcttgatggcttctacaaagacttc
accaagcagttgcaacatgctgagctgccaccggaagagggcggtatgcgccccaaccag
atggtgctgacagacataacctgtcctacttgtggtcgccaaatggggatccgtaccggt
actacaggtgtgttcctgggatgttccggttatgagctgccccccaaagagcgttgtaag
accacgttgaacctgactccgggtgaagaagctattagcgagagcgaagatgctgaaacc
gaggcgctcagggccaagcatcgctgtggcatctgcggtactgccatggatagctacctg
ttggatgaaacccgtaagctgcatgtttgtggtaacaaccctgcctgctctggatatgaa
gtcgagaaggggcagttcaaactcaaaggctacgaaggcccagtgatagagtgtgaccgc
tgcggtagtgatatggagttgaagaacggccgtttcggtaagtactttggctgcaccaac
agcgagtgcaagaacacccgtaaactgctcaagaatggtgaagttgcgccacctaaggaa
gatccaattcctttgcctgagctcaagtgcagcaagtcagacgctcatttcgtgttgcgt
gatggggcttcgggtattttcctggctgcaagtactttccccagatcccgagagacccgt
gcaccattggtctctgagttggtggagtaccgcgagttgctgtggcccaaatatcagttc
ctggctgatgcgccggtgaaagatgacgaaggcaacccggcgctggtgaagttcagtcgt
aagactaaagagcagtatgtggccagcgaagttgacggtaaggcgaccggttgggttgct
cattatcgtgatggcaagtggtttgctgaaaacagcaagaaaaagaaagccaagagttaa
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