Shewanella chilikensis: GII14_12020
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Entry
GII14_12020 CDS
T08813
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
schk
Shewanella chilikensis
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schk03016
]
GII14_12020 (rnd)
Enzymes [BR:
schk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GII14_12020 (rnd)
Transfer RNA biogenesis [BR:
schk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GII14_12020 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QIJ06757
UniProt:
A0A6G7LY75
LinkDB
All DBs
Position
complement(2624045..2625154)
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AA seq
369 aa
AA seq
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MQDYLYVKDDATLAQLVAQYRDAELLVLDTEFVRTRTYYACLGLIQAYDGKTLALIDPLA
ISDLSGFWALLTDEKITKLLHSCSEDLEVFARQGQCQPKPLFDSQLAAAIAGMGHGLGYA
KLVHECLGVELDKGESRTDWLKRPLSEAQLSYAANDVYYLYQLYPQLQQKLQQQGRIEWA
LEESRRMTEGRLDPPDEDTAYLRVKNAFQLSTPQLAVLKVLAAWRLRKALAKDMALGFVM
KDHALIGLAKRQPRGINDVLAMKELTDHEKRLYAKDVLKVMAKADMSNLPEPLDVLALKP
GYKSAFKTIKQCLSEVAESESVPMELLGSKRHIHEYLEWVWDGKQGASPLVLQGWRGQLV
ADKLAKLPL
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagattacctgtatgtaaaagatgacgccaccctggcacagctggtggctcaatac
cgtgatgccgaactgctggtgctggataccgaatttgtacgcacccgtacttattatgct
tgtttagggcttattcaggcctatgacggcaagaccttggctctgatagatcccttggcc
atctcggatctgtcgggcttttgggccttgttgaccgatgagaagatcaccaagttgttg
cactcctgcagtgaagacttggaagtgtttgcccgccagggtcagtgtcaaccaaagcct
ttgttcgacagtcaactggcagcggccattgccggcatggggcatggcctgggttatgcc
aagttggtgcatgagtgtctgggagtggagctcgacaagggcgagtcccgtaccgactgg
ttgaaaaggccgttatcagaggcgcagctcagttatgccgccaatgatgtctattatctc
taccaactctatcctcagctgcagcagaaactacagcaacagggccggattgagtgggca
ttggaagaaagtcggcgcatgacagaagggcgtctggatccgccggatgaagacacggcc
tatcttagagtcaaaaacgcctttcagttgagtacaccacaattggctgtgcttaaggtg
ctggcggcctggcgtttgcgtaaagcgttagcaaaggatatggcgttgggttttgtcatg
aaagatcatgcccttatcggcttggctaagcgtcagccaagagggatcaatgatgtgctt
gccatgaaagagctgacagatcatgaaaagcgtctttacgccaaagatgtgctcaaggtt
atggccaaggcggatatgagcaatctgcctgagcccttggatgtgctggcgctcaagccc
ggatacaagagcgctttcaaaaccattaagcagtgcttgagtgaggttgcagaatccgaa
agtgtgcccatggagttgcttggctccaagcgtcatattcacgaataccttgaatgggta
tgggatggcaaacaaggggcctcgcccttggtgttgcagggatggcgcggtcaacttgtg
gctgataaattggcaaaattgccactctga
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