Shewanella chilikensis: GII14_12700
Help
Entry
GII14_12700 CDS
T08813
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
schk
Shewanella chilikensis
Pathway
schk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII14_12700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schk03019
]
GII14_12700
03009 Ribosome biogenesis [BR:
schk03009
]
GII14_12700
Enzymes [BR:
schk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GII14_12700
Messenger RNA biogenesis [BR:
schk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GII14_12700
Ribosome biogenesis [BR:
schk03009
]
Prokaryotic type
rRNA processing factors
GII14_12700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QIJ04922
UniProt:
A0A6G7LT22
LinkDB
All DBs
Position
2765478..2768993
Genome browser
AA seq
1171 aa
AA seq
DB search
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPKGYSFQGRPSIKEVVSEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMEHLEVPNGMGLIVRTAGVGKAAADL
QWDLKVLLHHWTAIQEAAESRPAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPQIYADA
KQHIALVRPDFVDRVKPYSSEVPLFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCNGQGTIRGTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAYLLNEKRKAIRITEQRHDVEVYVIPDPHMMTP
NYRVVRHRKDDQISEVSYQRVEDPENKLYEPRKLERAAAPKPALSGFATPLKQETAEAPQ
TAKPAAKAATTEAAKPGIISRLFAALGAIFSSSEPQADKKQEKSTKDNQEGSGQNNRRNR
RNDRNDRRRKSGDDKDGNRDSRSRNRKSSANERPARDKDEQSNKRQANDTGKPTRGDRND
KAPKSEAVDERKSRSKARDESEQEPKQEAARERRQRRNLRRKVRIEASDAQEAVDNTAET
ASAEVKASTQAKSEVKVEAKTEAKPARAKESDAKDNAEQADKPRRSRRKPAAAQAESKEM
EVQTEVEAKSEAKSETATEQKGEESTQVATKAQGAEMSPDIQASADVSPVANAEQIAETS
VQASGVQSDAEAIEGAEEDDKPKREGQRRSRRSPRHLRAAGQRRRRTEQEGEESESTEKA
STEKAATEVANNAKEAVVAEASASAAAVEVAAEQAKPADKAQEQAQAEPQVVAKPAPQVE
AKPTPQVEAKPAPQVEAKAETKAEAQVETKPQAEVAAKVEAVADAKAAEVEVKAEPKTAE
AEPAPEAKAEKAEVAKAEPVEAAPSKAVEKASEAPKAKTVEVAAAKPKAETASASVAASA
PMAKPAAISRPARQSSNEAKESPAATPATTQASAAARVSRFSTMVGSDTTKPQVDQRAHV
EVPKGREYQANGETAPRKSHGNSAESDMARP
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgttaatcaatgcgactcaatccgaggagttgcgcgttgccctggttgat
gggcaacagctttatgatctggatatcgaaagcccaggccatgagcagaaaaaagccaat
atttataaaggtaaaatcacccgcgtagaaccctctctggaagcggcatttgttgactat
ggcgccgagcgtcatggctttctgccactgaaagagatcgctcgcgaatacttccccaaa
ggatactccttccagggtcgtcccagcatcaaagaagtggtcagtgaaggccaggaagtc
atagttcagatagataaagaagaacgtggcaacaagggcgccgccctgaccacctttatt
agtctggctggctcttacctggtactcatgcccaacaaccctcgcgccggtggtatctcc
cgtcggattgaaggtgatgagcgcactgagctgaaagcggccatggagcacctggaagtg
cccaacggcatggggctgattgttcgcaccgcgggtgttggcaaggctgccgccgatctg
cagtgggacttgaaggtattgctgcaccattggacagcgattcaggaagcggccgagagt
cgccctgctcctttcctgattcatcaggaaagcaatgttatcgtccgcgccatccgcgat
tacctgcgccgtgatgtaggcgaaattctaatcgatcacccacaaatttatgctgatgcc
aaacagcatatcgccttggtacgccctgattttgtcgacagagtcaaaccttactcttct
gaagtgccactttttacccactatcagattgagtcacagatagaatccgcattccagcgc
gaagttagactgccttccggcggctccatcgttatcgatcccaccgaagcgctgacctct
atcgatatcaactccgccagagccaccaagggcggcgatatcgaagaaaccgcactgaac
accaacctcgaagccgccgacgagattgcccgtcagttgcgtctgcgcgacttgggcggc
ctggtggttatcgacttcatcgatatgactccggtcagacaccaacgcgaagtggaaaac
cgtctgcgtgatgcagttcaccatgaccgtgcccgtgtgcaattgggccgtatttcccgc
ttcggtctgatggaaatgtcccgtcagcgtctgcgtccgtctctggaagagtccgccgct
cacatctgcccacgctgtaacggccagggcaccattcgtggtaccgagtcactggcactg
tcgattctgcgcctgatggaagaagaagccatcaaggaaaacacctctcagattgaggcc
atagtgcccgtggatgttgcggcttacctgctgaacgaaaagcgcaaggccatacgcatc
actgagcagcgccatgatgttgaagtctatgtgatccctgatccacacatgatgaccccg
aactaccgtgtggtgcgtcatcgcaaggacgaccagatctctgaagtcagctaccagcgt
gtggaagatccggaaaacaaactgtatgaaccacgtaaactggaacgtgcagccgcacct
aagccagcactgagtggtttcgctacacctctcaagcaggaaactgccgaagcaccgcag
acagccaaaccggcggccaaagccgcaacgactgaagcggccaagcccggaataatttcc
cgtttattcgccgccctgggtgccatcttctcctcttccgagccacaagccgacaagaag
caggaaaagagcactaaagacaatcaagaaggcagcggccagaacaaccgccgtaaccgt
cgcaatgaccgcaacgacagacgtcgcaagagtggtgatgacaaagacggtaaccgcgat
tcacgcagccgcaaccgtaaatcgtccgccaatgagcgccctgcccgtgataaagacgag
caaagcaacaagcgtcaggcaaacgacaccggcaagccaacccgtggtgaccgtaacgac
aaggctcccaagtctgaagctgtggatgaacgcaagagccgcagcaaggcccgtgacgaa
agcgagcaggaaccaaaacaggaagccgcccgtgagcgtcgccaacgtcgcaacctgcgc
cgtaaggtgcgcattgaggccagcgatgcacaggaagccgttgacaatacagcagagaca
gccagcgccgaagtgaaagccagcacccaggccaaatctgaagtaaaggttgaggcaaaa
accgaggccaagccagctcgcgccaaagagagcgatgccaaggataacgccgagcaagct
gacaagccgcgtcgcagccgtcgtaagcctgccgcagctcaggctgagtccaaggaaatg
gaagttcagaccgaagttgaagccaagtcagaagccaagagcgaaacggctaccgagcag
aagggtgaagagtcaactcaggttgccactaaagcccaaggtgcagagatgtcaccagac
attcaggcaagcgccgacgtcagccctgttgccaatgccgagcaaatcgctgaaaccagt
gttcaagctagtggtgttcaaagtgatgccgaagccattgagggtgctgaagaagacgat
aagcccaagcgcgaaggccaacgccgtagccgccgcagccctcgtcatctgcgcgcagcc
ggtcagcgtcgccgccgtactgaacaggaaggcgaagagtctgaaagtactgaaaaggca
agcactgaaaaagcagccactgaagtagcaaataacgctaaagaagcggttgtcgccgag
gcatcagcgtcagccgctgccgttgaagtcgccgctgagcaagcaaagcctgccgacaaa
gctcaagagcaagcgcaagctgaacctcaagttgttgccaagccggctcctcaggttgaa
gccaagccgactcctcaggttgaagccaagccggctcctcaggttgaagccaaagcggaa
accaaagccgaagctcaggttgagacaaagcctcaagccgaggtcgctgccaaggtagaa
gccgttgccgatgcaaaagccgccgaagtagaggtaaaggctgagcccaaaacagcagaa
gccgaaccagcgcctgaagccaaagctgaaaaagctgaagttgcaaaagctgagcccgtc
gaagctgcgccatcaaaggcggtagagaaagcgagcgaagcacccaaggctaaaactgtt
gaagtcgcagcagccaagcccaaggcagaaactgcatcggcaagcgtcgccgcctcagcc
cctatggccaagccggctgctatcagccgccctgcgcgtcagtcaagcaatgaagccaag
gaaagcccggcagcaacacctgcaacaacccaggcaagcgccgcagcaagagtcagtcgc
ttcagcactatggttggctcagatacaaccaagccacaggtggatcaacgtgctcacgtt
gaagtgcccaaaggccgtgagtatcaggccaatggcgaaaccgcgccacgcaagagccat
ggtaacagcgccgagtcagatatggcccgtccctga
DBGET
integrated database retrieval system
