Shewanella chilikensis: GII14_15590
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Entry
GII14_15590 CDS
T08813
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
schk
Shewanella chilikensis
Pathway
schk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GII14_15590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schk03019
]
GII14_15590
Enzymes [BR:
schk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GII14_15590
Messenger RNA biogenesis [BR:
schk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GII14_15590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
CMS1
P-loop_SecA
Helicase_C_4
Motif
Other DBs
NCBI-ProteinID:
QIJ05422
UniProt:
A0A6G7LUH3
LinkDB
All DBs
Position
complement(3421966..3423234)
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AA seq
422 aa
AA seq
DB search
MQFSETQLPGPLLEAVAQCGYRELTAVQQQVLPAALAGRDIMASAQTGTGKTAAFGLPLL
ATLIDEWQQQGLTEPEYGAAPRVLILTPTRELAQQVATQLGKYAAHTPFRILAIFGGANF
NPQRKAIAAGIEVLVATPGRLFDHLSQEHLRLDQVKALVLDEADRMLDLGFLPDIERLGR
YLPAGHQTMLFSATFPEAVKRLGHKLLDKPEWFEVDKESRTQTQIQQKVYPVDYRRKAEL
LAELIGRNNWQQVLAFVSTKESAEQLQQELKLDGIKSACFHGDKTQGARSRALAQFIDGE
IRVLVATDVAARGLDIPALPRVINLELPSQADDYIHRIGRTGRAGRSGEAISLVSPAEEQ
KLAEIEALLGYKLPREVLPGYEKDAPLPERYLQSMEKPRPAKTHRGHKPGRKGQQPKGPR
RR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttctgaaacccagctgccggggccgctgctcgaagccgtcgcccagtgtggc
tatcgtgagctgacggcggtgcagcagcaggtgttaccggcggcattggccgggcgggat
attatggcctcggcccagacaggcacaggcaaaaccgcggcctttggcttgccgctgttg
gccaccttgattgatgagtggcagcaacaggggctcactgagcctgagtatggcgccgcg
ccgagagtgcttatcctgacaccaacccgcgagctggcgcagcaggtggcgactcagctg
ggcaaatatgccgcccatacgccatttcgcattttggccattttcggcggcgccaacttc
aaccctcaacgcaaggcgatagcggccggtattgaagtgctggtggcgacgccggggcgg
ctgttcgatcaccttagccaagagcatctcaggctggatcaggttaaggccctggtgctg
gatgaggctgaccgcatgttggatctggggtttttgccggatattgagcgcctggggcgc
tatctgccagccggacatcagaccatgttgttttcggcgacctttcccgaggcggttaag
cgcctcgggcacaagctgctcgataagccagaatggtttgaagtggataaagagagccgt
actcagacacagatccagcaaaaggtatatccggtggactatcgccgtaaagccgagttg
ctggctgagcttattggccgcaataactggcaacaggtgttggcctttgtcagtaccaag
gagagcgccgagcagttgcaacaagagctgaaactcgacggcatcaagagcgcctgtttt
cacggcgacaagactcagggggcccgtagccgcgctctggcgcagttcatcgatggagag
attcgggtattggtggcaaccgatgtcgcggcccgaggcctggatattcccgccttgcca
agggttatcaacctcgagctgccatcccaggctgatgactatattcatcgcatcggccgt
accggcagagccgggcgcagcggcgaagccatctctttggtgagcccggctgaagagcaa
aaactggctgaaatagaagccctgctcggttacaagctgccaagagaagtactgccgggt
tacgagaaggacgcgccgctgccggagcgctatttacagtctatggagaagccccgacct
gccaagactcacaggggccataaacccggtcgtaagggccagcagcccaaagggccaagg
cgcaggtag
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