Shewanella chilikensis: GII14_21985
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Entry
GII14_21985 CDS
T08813
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
schk
Shewanella chilikensis
Pathway
schk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
schk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GII14_21985 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schk03021
]
GII14_21985 (rpoC)
03400 DNA repair and recombination proteins [BR:
schk03400
]
GII14_21985 (rpoC)
Enzymes [BR:
schk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GII14_21985 (rpoC)
Transcription machinery [BR:
schk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GII14_21985 (rpoC)
DNA repair and recombination proteins [BR:
schk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GII14_21985 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QIJ06574
UniProt:
A0A6G7LXW2
LinkDB
All DBs
Position
4866210..4870421
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEVEQMREELPSINSETRRKKVTKRLKLVEAFYHSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYMSRERVNGRGEGMAFESVAEAEKAYRTG
AAELHARVKVRITETHIDENGERTQQRRIVDTTVGRALLSLILPAGMSFDLVNQNMGKKQ
ISRLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMEIPEAKYKLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSEVVINRDGEEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLIMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGSDEVLAPRNTLLDEAWCDKLEEYSVDEVKVRSVISCDTDFGVCAKCYG
RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGNLKL
HNAKFVKNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLETLEGAEVNAGQTIANW
DPHTHPIITEVAGYVKFEQMIDGVTISRQTDELTGLSSIVVLDVAQRPSAGKEMRPMIRL
VDENGNDLTIPGTDVPAQYFLPSNAIVNLEDNAQISVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPAEGGNPYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITEAGDSEFLEGEQVEVSRVKIANRELEEQGKIPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHNNRNQARGEVATEA
PSISASEAEQNLADLLNLAGSQE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaaggcatc
aagatcggcctggcgtcgcctgatctgatccgttcttggtcatttggtgaagttaagaag
cctgaaaccatcaactaccgtacattcaagcctgagcgtgaaggcctgttctgtgcccgt
atctttggcccggtcaaagactacgagtgtctgtgcggtaagtacaagcgtctcaagcac
cgcggtgtgatctgtgagaagtgtggcgttgaagtgacccagaccaaagtacgtcgtgag
cgtatgggccacatcgaactggccagcccagttgcccacatctggttcctcaagtcactg
ccatcccgtatcggtctgatgctggacatgactctgcgtgatattgagcgagtactctac
ttcgaatcttacgtggttatcgagccaggcatgaccagcctggagcgcggtcaaatgctg
accgaagaaacctacctggatgcgctggaagagtatggtgacgagtttgaagccaagatg
ggtgccgaagcggttctggaactgctgcgcgctatcgatctggagaaagaagttgagcag
atgcgcgaagagctgccatctatcaactctgagacccgtcgcaagaaagtcaccaagcgt
ttgaagctggttgaggccttctaccattcaggcaacaagccagagtggatgatcctcaag
gtgttgccggttctgccacctgatctgcgtcctctggttccactggacggtggccgtttc
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgctggatctggctgctccggatatcatagttcgcaacgaaaagcgtatgctgcag
gaatctgttgatgccctgctggataacggtcgtcgcggtcgtgccattaccggttccaac
aagcgtcctctgaagtccttggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacctgctgggtaagcgtgttgactactcaggccgttcggtaattaccgtgggcccaact
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcgctggaactgttcaaaccattc
atctacggcaagctggaaggtcgtggcctggccactaccatcaaagctgccaagaagatg
gttgagcgtgaagttgccgaggtttgggacgtactggatgaagtgatccgcgaacacccc
gtgatgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcgttcgaacctgta
ctgatcgaaggtaaagcgattcaactgcacccattggtgtgtgcggcttataacgccgac
ttcgatggtgaccaaatggcggtacacgtgcctctgacgctggaagcccagctggaagcc
cgtgcgttgatgatgtcaaccaacaacattctgtcgcctgccaacggtgagccggttatc
actccttctcaggacgtggtactgggtctgtactacatgagccgtgagcgcgtaaatggc
cgcggtgaaggtatggcctttgagtctgttgccgaagccgagaaagcctatcgcacaggt
gccgctgagctgcacgcccgggttaaagttcgtatcaccgaaactcatatcgatgagaat
ggtgagcgcacccagcagcgccgcattgtcgacaccacagtaggtcgtgctctgttgtca
ctgatcctgccagccggtatgtcttttgatctggttaaccagaacatgggcaagaagcag
atctcccgtttgctgaacacctgctaccgtcagctgggtctgaaagatactgttatcttt
gctgaccaactgatgtacacaggtttccaatacgccactatctctggtgcctctgtcggt
atcaacgatatggaaattccggaagccaagtacaagctggttgccgacgcagaagccgaa
gttctggaaatccaggaacagttccagtctggtctggtaactgccggtgagcgttacaac
aaggttatcgatatctgggccagcgccaacgagaaagtctccaaggcgatgatggaaaac
ctgtcttccgaagtggttatcaaccgcgatggtgaagaagagaaacaggcttccttcaac
agcatctacatgatggccgactcaggcgctcgtggtagtgccgctcagatccgtcagttg
gcgggtatgcgtggtctgatggccaagccagacggctctatcattgaaacgcccatcgtg
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcaacccacggtgctcgt
aagggtctggcagataccgcacttaagacagcgaactcaggttacctgactcgtcgtctg
gtggatgttgcccaggatctggtcgttatcgaagatgactgtggtactcacgaaggtctg
atcatgaagccgctgattgaaggtggtgacgtggttgagccgctgcgtgagcgggtactg
ggtcgtgttgttgccgaggatgtttactatcctggttccgacgaagtcctggcgccacgt
aacactctgctggatgaagcatggtgtgacaagctggaagagtacagtgttgacgaagtt
aaagttcgctctgtgatctcctgtgataccgacttcggtgtttgcgccaagtgttacggt
cgtgacctggcccgtggtcacctgatcaaccaaggtgaagcaatcggtgttgttgctgct
cagtcaatcggtgagcctggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatccagggcttctgcagaaaacaacgttcaggtgaagaacgccggtaacctgaagctg
cataacgccaagttcgttaagaacagcgatggcaagctggttatcgtatcgcgctcgtcc
gagctggcgattattgatgaactgggccgtgagaaagagcgctataaagtgccttacggt
actgtgctcgaaacgctggaaggtgccgaagttaacgctggccagactatcgctaactgg
gatccgcatactcacccaatcatcactgaagtggcgggttatgtgaagtttgagcagatg
attgacggtgtcaccatctcgcgtcaaaccgacgagctgaccggtctgtcttccatcgtg
gtattggatgtggcccagcgcccaagcgccggcaaagaaatgcgtccaatgatccgtttg
gttgacgaaaacggtaatgacctgaccattcccggtaccgacgtacctgcgcagtacttc
ctgcccagcaatgcgatcgtaaacctggaagataatgctcagatcagcgttggtgatgca
ctggctcgtattcctcaggaatcgtccaagactcgcgatattaccggtggtctgccaagg
gttgctgacctgttcgaagcccgtaagccaaaagagccggcgattctggctgagatcagc
ggtaccatctccttcggtaaagagaccaaaggtaagcgtcgtctggtcattacccctgct
gaaggcggtaacccatacgaagagatgatccctaagtggcgtaacctgaacgtgttcgaa
ggtgaaaaagtcgaacgcggtgaagtgatcgccgatggtccagagtctgctcacgatatt
ctgcgtctgcgcggtattcacaacgtagccaactacattgtgaatgaagtacaggacgta
tatcgtctgcagggtgtgaagattaacgacaagcacattgaggtgatcattcgccagatg
ctgcgtaagtgtctgatcactgaagccggtgattctgagttcctcgaaggggagcaggtt
gaggtgtcccgcgtcaagatcgctaaccgcgaactggaagagcagggcaagattccggcc
aagttcgaacgcgaactgctgggtatcaccaaagcctctctggcgaccgagtccttcatc
tccgcggcctcgttccaggaaaccactcgcgtactgaccgaagcggcagtaggtggtaag
agtgacaacctgcgcggtctgaaagagaacgtgatcgtaggtcgtctgatcccggccggt
accggttatgcttaccacaacaaccgtaaccaggctcgcggtgaagtagcgactgaagca
cctagcatcagcgccagcgaagccgaacagaacctggccgatctgttgaacctggctggc
agtcaggaataa
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integrated database retrieval system
