Schlesneria sp. DSM 10557: QJS52_00220
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Entry
QJS52_00220 CDS
T10918
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
schl Schlesneria sp. DSM 10557
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schl03016
]
QJS52_00220
Enzymes [BR:
schl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QJS52_00220
Transfer RNA biogenesis [BR:
schl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QJS52_00220
Prokaryotic type
tRNA splicing ligases
QJS52_00220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XFP03945
LinkDB
All DBs
Position
complement(3908445..3909830)
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AA seq
461 aa
AA seq
DB search
MNTTQLRKLGVSDLCIGAAIEGIQRAVQEDELRGREIKKLISSVLAEPSDFVAHPHFGRL
AREIIENANFTRPAPIEYQVWGREIDAACHAQMRQSCALPMAVGAAIMPDAHLGYGLPIG
GVLALENAVVPYAVGVDIACRMKLSILDIPTTELDANFYRFKNALDKGTRFGIGSVHERP
QQHAVMDADWTVSRVTRENRDKAWKQLGTSGSGNHFVEFGRLTLEQRDEQLGLEKGEYVA
LLSHSGSRGTGASVCDTYSNIARALLPRQYVDFGRLAWLDLDSEAGQEYWAAMTLMGEYA
AANHDVIHRLVSLIVGGKIIAGVENHHNFAWIENHNGRDVVVHRKGATPAGEGVLGVIPG
SMADPAFVVRGKGNPASLNSASHGAGRRMSRTAAREKYSWRAVQRDLENKGVRVLSAGAD
EVPYAYKNILDVMQDQQDLVETVARFDPLIVKMSEDGRAED
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaacacaacttcgcaaacttggggtttctgacctctgcatcggagccgccatt
gaaggaattcaacgtgccgtgcaggaagacgagctgcgcgggcgggaaatcaagaagttg
atcagcagcgtgctggcggaaccgtcggatttcgtcgcacatccgcactttggtcgactc
gcccgggaaattatcgagaacgccaatttcactcgccctgcccccatcgaatatcaagtc
tggggacgggaaatcgatgcggcatgccacgcacagatgcgccagtcgtgtgcacttccc
atggccgtgggcgccgccatcatgcctgacgcgcacttgggttacgggctgccgattggg
ggggttctggcactggaaaatgccgtggtcccttatgccgtcggcgtggatatcgcgtgc
cgcatgaagctgtcgatcctcgatattccgacaacggaattggacgccaatttctatcgg
ttcaagaacgccctcgataaggggacacgatttggaattggatctgtccacgagcgtccc
cagcagcacgcggtgatggacgccgactggacggtttctcgagtgacgcgcgaaaaccgg
gacaaggcgtggaagcagctcggaacatccgggtccggaaatcattttgtggaatttgga
cgactcacacttgagcaacgggacgaacagttaggactggaaaaaggggagtacgttgcc
ctgctcagccatagcggaagccgcggaaccggtgcttccgtttgcgatacctatagcaac
atcgctcgagctctattgcctcgccaatacgtcgacttcggtcgcctggcatggctggac
ctcgacagtgaagcaggccaggagtactgggctgcgatgacgttgatgggggaatacgct
gctgcgaaccacgacgtcatccaccgacttgtttcactcatcgtgggtggaaagatcatt
gctggcgtcgaaaatcaccacaacttcgcgtggatcgagaaccacaacgggcgcgacgtc
gtagtccaccgtaaaggagccacacccgcgggggaaggtgtactgggagtcatccccggt
tccatggctgatccggcatttgttgtccgtggtaaaggaaatccggcgagtctaaattcc
gcctcccatggcgcgggtcgtcgcatgagtcgcaccgcagcacgtgagaagtactcttgg
cgagccgtccagcgagatctggagaacaaaggtgtgcgggttctttccgcaggagcagac
gaagtcccctacgcctacaagaacattcttgacgtgatgcaggatcagcaggatctggtg
gaaacggtcgcgcgattcgacccgctcatcgtgaaaatgagtgaggatggccgagcggag
gattaa
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