Schlesneria sp. DSM 10557: QJS52_03295
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Entry
QJS52_03295 CDS
T10918
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
schl Schlesneria sp. DSM 10557
Pathway
schl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJS52_03295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schl03019
]
QJS52_03295
Enzymes [BR:
schl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QJS52_03295
Messenger RNA biogenesis [BR:
schl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QJS52_03295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XFP04538
LinkDB
All DBs
Position
4750169..4751488
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AA seq
439 aa
AA seq
DB search
MSFSDLGLCQPILNAVKAEGYETPTPIQAQAIPHALAGRDLFGCAQTGTGKTAAFSLPIL
HRLMEAGVPSSKVRRPIRALILAPTRELAIQIADCILAYSQNTHIRHTLVFGGVSQVPQV
RALQRGIDIVVATPGRLCDLIGQGHVDLSHVETFVLDEADRMLDMGFIHDIRHIAERVPK
ARQTLFFSATMPREIRELSTSLLSNPVTVEITPVATAAETVQQSVFMIPQSNKPRLLQTL
LTMPEIARALVFTRTKHGADKVLRHLMQAGIRADTIHGGKSQAKRQRALADFKSNRLQVL
VATDIAARGIDVDGITHVINYDLPAEIESYVHRIGRTGRAGAKGIAMSFCDPTERSKLRA
IERAIRQPIEVAKTPNLVIAPVAAIKHDFETREPHRPARPTDGTNGMPPRRPQGAMGDRR
PGQGSRAGGPPRRRDYSSR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttttctgatctcgggctttgtcagcccattttgaatgcagttaaggcagaaggt
tatgaaacccctacgccgatccaggcacaggcaattccgcacgcgttagcaggacgcgac
ctcttcggatgcgcccagacgggtactggaaagacggccgcattctccttgccaattctc
catcgattgatggaagctggcgttccttcatcgaaggttcgtcgtccaattcgggcgctg
atccttgcccccactcgagaattggcaatccagattgccgactgcattctggcctacagc
cagaacacccatattcgtcacacgctggttttcgggggtgtaagtcaggttccgcaggtg
cgcgctctgcagcgcggaatcgatattgtcgtcgctaccccgggacgattgtgtgacctg
atcgggcagggtcatgtcgacctcagccacgtcgaaacattcgtgctcgacgaagcagat
cgaatgctcgacatgggcttcatccacgatattcgtcacatcgccgaacgagttcccaaa
gctcgacagacgttattcttttcggccacgatgccgcgagaaattcgcgaactgtcaacc
tcgttgctgagcaatcccgtcacggtcgaaattacgcccgttgcgaccgctgcggaaaca
gtccagcaatcggtgttcatgattccgcaatcaaacaagccacgtctgcttcagacgctg
ctgacgatgccggaaattgctcgagctctggttttcacccgtaccaagcatggcgccgac
aaggttctgcgtcacttgatgcaggcgggaattcgggccgacacgatccacggcggcaag
tcacaagccaaacgccagcgcgcgttggctgacttcaagtcgaaccgactgcaagtactg
gtcgcaaccgacatcgccgctcgcggaattgatgtcgacgggatcacccacgtgatcaac
tatgacctgccagcggaaatcgaatcgtacgtccaccggatcggacgaacgggtcgtgca
ggcgcgaaggggatcgcgatgtccttctgcgatccaaccgaacgatccaaactgcgagcc
attgagcgagcaatccgccagccgatcgaagtcgccaagacgccgaacctggtgattgct
cctgttgctgcaatcaagcacgactttgaaacccgcgagccgcaccgccctgcacgtccg
accgatgggacgaacgggatgcccccacggcgaccccaaggggcgatgggtgatcgacgc
cctggccagggaagccgggcaggtggccccccccgccgccgggattacagcagcaggtaa
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