Schlesneria sp. DSM 10557: QJS52_03425
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Entry
QJS52_03425 CDS
T10918
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
schl Schlesneria sp. DSM 10557
Pathway
schl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
QJS52_03425 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schl03021
]
QJS52_03425 (rpoD)
Transcription machinery [BR:
schl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
QJS52_03425 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Mce4_CUP1
UPF0242
DUF932
Flagellin_N
HTH_15
Zw10_N
FapA
RPW8
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
XFP04562
LinkDB
All DBs
Position
4791739..4793400
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AA seq
553 aa
AA seq
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MYRLDASLNQLIEMGRQQGFLTFSQVNAYLPDEAVNPEKLDNLLMSLDELGMQIVADERL
PVTPEIFMKRRGGKAKPAKSEKADDKSRRIDDPVRMYLTQMGEIPLLTREQEISLAKKIE
ITRKRFRRHLLESDYALKQSIDILKKVNCGELPFDRTIKVSVTEGLEKNQILGRMPHNLR
SLETMREKSVADFEEMIKPGKTAAEVRAIQQRIEQRRRKMVTLLEELSLRTQRLQPTMRR
LEQISNRMDQLQRQIDGMKNLKSAKDERANLQKELLDLMQMTLETPQSLRQRLDDVRERF
SAYEQSMRELSGGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGYKFST
YATWWIRQAITRAIADQARTIRIPVHMIETMSKLRKVSKRLLQEKGREPTIEETAEAAGV
SLEETRRVLKISRHPISLDRPVGESEDSYFGDFIEDDNTESPVNSATQEMLKDKIDVVLK
TLTYREREIIKLRYGLGDGYTYTLEEVGRIFKVTRERVRQIEAKAVRKLQHPVRSKQLKG
FLDTLAAAAASAN
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
gtgtacagacttgacgcgagtttgaaccagttaattgagatggggcggcaacagggtttc
ttgaccttttctcaggtcaatgcatacctgcccgacgaagcggttaatcccgaaaaactc
gacaacctgttaatgtcgctcgacgaactcgggatgcagatcgtcgctgacgagaggttg
ccggtcactcctgaaatcttcatgaaacgccgcggaggcaaggccaagccggccaagtca
gaaaaagccgatgacaaatcacggcgaatcgacgaccccgtgcgcatgtacctgacgcaa
atgggcgaaatccccctgctgacccgcgagcaggaaatctcgctcgccaagaagattgaa
atcacccgcaaacgattccgtcggcatctgctggaaagcgattatgcgctgaagcaatcg
atcgacatcctcaagaaggtcaactgtggcgagctcccgtttgaccggaccatcaaggtt
tctgtaaccgaggggttggaaaagaatcagatcctcggccgcatgccgcacaaccttcgc
tcgctcgaaacgatgcgtgagaagagtgttgcggactttgaagagatgattaagcccggc
aagaccgccgcggaagtcagggccatccagcagcgtattgaacagcgacgccgcaagatg
gtgacgctgcttgaagagctcagtctccgtacgcaacggttgcagccgacgatgcggcgg
cttgaacaaatttccaaccgcatggatcagttgcaacgtcagatcgacgggatgaaaaac
ctgaagtctgccaaagacgagcgagccaatctccagaaggaactgctcgacttgatgcag
atgacgctggaaactcctcagtccctgcgccagcggctcgatgacgtccgtgaacgattc
agcgcttacgaacagtcgatgcgggaattatccggcggaaacctccgactcgtggtttcc
attgccaagaaataccgcaatcgcggactgagcttcctggacctgattcaggaaggcaac
accggcctgatgcgtgccgtcgacaagtacgagtatcgtcgcggttacaagttttcgacc
tacgccacgtggtggatccgacaggccattacgcgagccattgcggatcaggcccgaacc
atccgtatcccggtccatatgatcgagaccatgtccaagctgcgcaaggtcagcaagcga
ctgctgcaggaaaaaggtcgcgaaccgacgatcgaggaaaccgccgaagccgcgggagtc
agcctcgaagaaactcgtcgtgtcctgaaaatctcgcggcatccgatcagcctcgaccgt
cccgtgggcgagagtgaagacagctactttggcgactttatcgaagacgacaacaccgaa
agccccgtcaactctgcaacccaggagatgctgaaggataagatcgacgtcgtcctgaaa
acgctgacttaccgtgaacgggaaatcatcaagttgcgctacggtctgggtgacggctac
acttacaccctcgaagaagtggggcggatcttcaaagtgactcgtgaacgcgttcgccaa
atcgaagcaaaagccgtccgaaaactccagcatccggtccgcagcaagcaactcaaaggc
ttcctggacactttggctgctgcagccgcttcggccaattga
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