Schlesneria sp. DSM 10557: QJS52_10995
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Entry
QJS52_10995 CDS
T10918
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
schl Schlesneria sp. DSM 10557
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schl03016
]
QJS52_10995
Enzymes [BR:
schl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QJS52_10995
Transfer RNA biogenesis [BR:
schl03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QJS52_10995
Prokaryotic type
tRNA splicing ligases
QJS52_10995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XFP06041
LinkDB
All DBs
Position
7017698..7019215
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AA seq
505 aa
AA seq
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MPPLPEAERNFIIHTLIPTSEATAILPTGTQTPPITVIGTDAIRQTFDEGCLQQAVNSRL
APGVTDLVLNPDAHVGYGAPIGCVLVSPTHVYPGPVGVDIKCSMSLLQLSLPADQIVDRF
TRRALINAICERTPTGTGRGQRHVKKSRIVSEQLGKQLLVEGASESVCQQLGIPAEWARR
CEDAQHFGHDGTTSALGERLQTHLDSGGLPTFERQIHQLGSYGGGNHFGECEVVQVEDHD
RARQAADVFGLKDQHVAFLSHCGSRGIGHTLASGQFKTLQRKFESWNIPLPGQDRELVYA
PLGTPEANAYLDDMALGANFATLNHLLINALVLEAFQEVIPGVTGQLVYFISHNIVRQEV
VNNRLSWVHRKGATRAFPAGHHALKGTMYESTGHPILLPGNPQAGSSVMVAEQGAALSCY
SVNHGAGRVLGRKRAIRELDQQSIDQSFDNEDILTNCRLYPKDEAPAAYKNFDEVIESVK
MAGLATEVARLKARFVIKDGDKADD
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtgccaccgctgccggaagcggaaaggaatttcatcattcacacgctcattcccacttcc
gaggcgactgcgattcttccgacggggacgcagacaccccccattacggtgatcgggacg
gacgcgatccggcagacatttgacgagggatgcctgcaacaggcggtgaactcgcggctg
gctcctggggtgacggacctcgtcttgaatccagatgcccatgtgggctatggagccccc
atcggatgcgtgctggtgtcgccgacacatgtttatccggggccggtcggtgtggacatc
aagtgttcgatgagcctgctgcaactgagtcttcctgcggatcagatcgttgatcgattc
acccgtcgcgccctgatcaatgcgatttgtgaacggacgccgacgggaaccgggcgggga
caacggcatgtgaagaaatcccgcatcgtctctgaacagctcggcaagcaactgctggtc
gaaggggcttccgagtcggtctgtcagcagctgggaattcctgccgagtgggctcggcgt
tgtgaagacgctcagcacttcggacatgacggaaccacttccgctctgggcgagcgtctg
caaacacaccttgactccggcggcctccccacgttcgagaggcagattcatcagttaggt
tcgtatggtggcgggaatcatttcggtgaatgtgaagtcgttcaggtggaagaccatgac
cgcgcccgacaggccgccgacgtgtttggcctgaaggatcagcatgtcgcatttctctct
cattgcggatcgcgcgggatcgggcacacgcttgccagtggccagttcaagacgctgcag
aggaaatttgaaagctggaatatcccgctccccggacaggatcgggaactggtctacgct
ccactgggaactcccgaagcgaacgcgtacctggatgacatggctctgggagccaacttt
gccacactgaaccacctgttgatcaacgcgctggtgctggaggcgttccaggaagtgatt
ccgggcgtgaccggacagcttgtctatttcatcagtcataacattgttcgacaggaagtt
gtgaacaaccgcctctcctgggttcaccggaaaggagcgactcgggcctttccggcggga
catcatgcactgaaggggacgatgtatgaatcaacgggtcatcctatcctgttaccgggg
aacccgcaggccggttccagtgtcatggttgcggaacaaggagcggcgttgagttgttac
agcgtgaatcatggagcaggacgggtactgggacgtaagcgagccatccgcgaactggac
cagcaaagtattgatcagtcgtttgacaacgaagatatcctgacgaactgccgtctttat
cccaaagacgaagctccggcggcgtataagaactttgacgaagtgatcgagtctgtgaaa
atggcgggactggcaacggaagtcgcccggctgaaagcacggttcgtgatcaaggacggc
gataaggcggatgattaa
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