Schlesneria sp. DSM 10557: QJS52_13105
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Entry
QJS52_13105 CDS
T10918
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
schl Schlesneria sp. DSM 10557
Pathway
schl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QJS52_13105 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schl03021
]
QJS52_13105 (rho)
03019 Messenger RNA biogenesis [BR:
schl03019
]
QJS52_13105 (rho)
Transcription machinery [BR:
schl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
QJS52_13105 (rho)
Messenger RNA biogenesis [BR:
schl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
QJS52_13105 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
OB_RNB
AAA_24
AAA_25
NACHT
Mor
Motif
Other DBs
NCBI-ProteinID:
XFP06341
LinkDB
All DBs
Position
complement(490333..491877)
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AA seq
514 aa
AA seq
DB search
MTMKPRPSYPRTTPATPAAGWDVPAEGPLSASLGRDTPISREAVSREPALQREPRETPPA
APAAPAKIVDVEEDDDANHFVADERYEEIKRGSSDIHIAELQRLTMKDLIVLAKRENISE
YTGLKKQDLIFKILKERTKMNGLMFGEGTLEILPDGFGFLRAADYHYLPCPDDIYVSPSQ
IRRFGLRNGAMVAGQIRPPKENERYFALLRVEAINNEDPNLLTEKVFFDDLTPLHPTRRL
KLCSDPNELSTRVVDMISPIGMGQRGLIVSPPKAGKTILLQKMAKAVLSSDPDVYVIVLL
IDERPEEVTDMERQVKGKNCEVISSTFDEPPSRHIQVSEMVIEKAKRMVEYGQHVVIFLD
SITRLARAWNTECPHSGKILTGGVDANALQHPKRFFGAARNVEEGGSLTIVATALVDTGS
KMDDVIFEEFKGTGNTELHLDRRMVEKRVWPAIDVNRSGTRREELLMSEEELRRVWLLRR
ILNDMNPVEAMELLTSRMRRTKSNDEFLMTMNLN
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgactatgaaaccccgcccctcgtatcctcgtactactcctgcaacacctgctgccggt
tgggatgtccctgctgagggaccgttgtcggcatcgctgggacgcgacacgcccatttca
cgagaggctgtctctcgcgagcccgctctgcagcgggagccgcgcgagacacctcctgct
gctccggcggcaccagccaaaattgtcgatgtggaagaggatgatgacgcgaaccacttc
gtggcggacgagcgttatgaagagatcaaacggggctcgtctgatattcatattgcggaa
cttcagcgtctgacgatgaaagacctgattgttctcgcgaaacgcgaaaacatttcagaa
tacacgggactcaagaaacaggacctcatcttcaagatcctcaaagagcggacgaagatg
aatggcctgatgttcggcgaggggacgctggagatcctgccagacggtttcggcttcctg
cgagcggccgattatcactatctgccttgtcctgacgacatctatgtatcgcccagccag
atccgtcgattcggacttcgtaacggtgcgatggtcgccgggcagatccgcccaccgaaa
gagaatgagcgatacttcgccctgctgcgtgtcgaagccattaataatgaggacccgaac
ctccttacggaaaaggtcttctttgacgacctgactccgcttcaccccacgcggcgactc
aagctgtgcagcgaccccaatgaactcagcacccgcgtggtcgacatgatttcgccgatc
ggtatgggacagcgaggcctgatcgtttccccgccgaaagcgggtaagaccatcctgctt
cagaaaatggcgaaagccgtactgagctccgatccggacgtctacgtgatcgtcctgctg
atcgacgagcgccctgaagaagtgaccgacatggagcggcaggtcaaaggcaagaactgc
gaagtcatcagcagtacttttgatgagcctcccagccgacatatccaagtgtccgagatg
gtgatcgagaaggccaagcggatggtcgagtacggtcagcacgtcgtgatcttcctcgat
tcgatcacgcgactggcgcgcgcctggaacacggaatgtccacactcgggcaagatcctg
accgggggggttgacgcgaacgccttgcagcatcccaagcgattcttcggggctgctcgt
aatgtcgaagaagggggtagcctcaccatcgtcgccacggctctggtcgacacggggagc
aagatggatgatgtgatcttcgaagagttcaaagggacagggaatacggagcttcatctc
gaccgccgtatggtcgagaagcgagtctggcctgccatcgatgtcaatcgttcaggaaca
cgtcgcgaagagttgctgatgtcggaggaagagcttcgtcgtgtctggctgctcaggcga
attctgaatgacatgaatccagtcgaagcgatggaactgctgaccagccggatgcgcagg
accaagtccaacgatgaattcctgatgacaatgaacctgaactag
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