Schlesneria sp. DSM 10557: QJS52_24065
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Entry
QJS52_24065 CDS
T10918
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
schl Schlesneria sp. DSM 10557
Brite
KEGG Orthology (KO) [BR:
schl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schl03019
]
QJS52_24065 (hrpA)
Enzymes [BR:
schl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QJS52_24065 (hrpA)
Messenger RNA biogenesis [BR:
schl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QJS52_24065 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
APHB_HrpA
ABC_tran
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
Motif
Other DBs
NCBI-ProteinID:
XFP03729
LinkDB
All DBs
Position
complement(3584370..3588668)
Genome browser
AA seq
1432 aa
AA seq
DB search
MNEIAAQIEASLSKTMLVDRHRLRQQWRRLQSQHPPAKGSSASPSPKEGGGKRLEKFQED
LARSCQRYEQRLRGVPELSFDDALPVVQRKDEIAAAIRDHQVVVVCGETGSGKSTQLPKI
CLELGRGVAGMIGHTQPRRIAARSVATRVAEELSVSVGREVGFKVRFADATSSQTYIKLM
TDGILLAETQSRPFLDDYDTIIVDEAHERSLNIDFLLGNLHRLVARRRELKVIITSATID
AERFADHFRPIAGKVPVMEVSGRTYPVEMIYRPPTVDQNGDEPDWPKAVADAVSEVCSRG
PGDVLLFMPTEREIHEAAKALRGRTFGGSKPDILPLYARLSAAEQQRVFQTASNRRIVIA
TNVAESSLTVPGIRYVVDTGTARISRYSPKSKLQRLPVEPVSRASADQRAGRCGRVGPGV
CIRLYSEEDYQSRERYTPPEILRSNLANVILQTKTLGLGEIEEFPFLEPPKTESIKDGYK
TLFELGAVTEDHKLTEIGRKLARLPVDPRIARIIWAAHEENCLGDALIIASALEVQDPRE
RPLEKQKQADESHQRFADEDSDFLSDLKLWDFYHKLKGELSKGQLHKACHQNFLSWTRMR
EWIDVHAELVQIVRESMASETRGRESRPAANHTNESSSKQHGARAATAGSPPFTKRAKQP
ESSATTQKVDTLFARRHDVGAIHRALLTGYLSSIAFKTESGEYLAAGGMKAYLWPGSGLA
AKKPKWIVAAELVETTRRFLRTVAKIDPAWIEPLAEHLIDRSYSEPHWDPDSLAVMAYEK
VTLFGLVLVPRRRIRYSRIEPVKSRELFIQHALVYGEWPEDDSDSEPSQRRDYSNYQSRN
PDRTNSQRGAGKQAPSQGTGGSETTASRGSRAAVVPAAEGSTGQSVTTRFTAPPAFLIHN
RKLVKQLEDLQTRVRRGSLLKAEQAQFDFYDSRLPADVNDGHRLVQWLRSAAPSDQKRLL
MADADLLEADAIVATKESYPDTIQMKNLSLPLTYRLDPSAPDDGVTITVPQEGLNQLDGE
RLGWLVPGLIEDKIVALIRTLPKELRRDLVPIPEVAAEVAKVVLFGEKSLEAAIVEGIEF
VTGIEIPVTAFDESKLPDHLRMLIRVTDAEGRTLAAGRDLTALRKEFGAIASVSFSASDD
PRWIRDGIKTWDCGTLPPVIDVMRRGVALKGYPTLMDKEDSASLRLLDTLEKSQHEMRFG
VRRLIVLTVFRELKQQIDHLPSLQNWALSAKSFPPPFPFRTQVQELLADRAFLASDKFPR
SDAEFRECLRIGRTRMPAAVTEITGFLTSLFQAYAEVRRIWEKTAHPQWQTTRLDVHSQL
AQLFSPGFLVRTPWPWLVQFPRYTRGISLRLQKLTSGGAARDQQLQQQIVLRWRRGIERL
KLHADQHIYDPELESYRWMSEELRVALFAQELGTSISVSEKKLDKQWEKVKQ
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaattgccgcccaaatcgaagcttccctttcgaagaccatgctggttgaccgg
caccgcctgcgccagcagtggcgacggttacagagccagcatcctccggcaaagggaagc
tcagcgtctccttcaccgaaggaagggggcggcaagcggctggaaaaattccaggaagac
ctggccagatcatgccagcgttacgaacagcgtctgcgcggcgttcctgaactgtcgttc
gacgacgcactgccggtggtccagcggaaggacgaaattgccgccgccattcgggatcat
caggtggtcgtcgtctgcggagagaccggctctgggaagtcgacgcaacttcccaagatt
tgcctggaactcggtcgtggtgtcgccggaatgatcgggcacacgcaaccccgacgaatc
gccgcccggtctgtcgccactcgcgtggcagaagagttgtcggtgtctgtcgggcgcgaa
gtcggtttcaaggtccgctttgccgacgcaacgtcgtcacagacctacatcaagttaatg
accgacggaatcctgcttgccgaaacgcaaagccgcccattcctcgacgactacgacaca
attatcgtcgatgaagcgcacgagcggtcgctgaacatcgattttctgctgggaaacctg
catcgcctcgtcgcccggcggcgcgagctgaaagtcattattacttccgccacaatcgat
gccgagcgatttgccgatcacttccgccccatcgctggaaaggtgcccgtaatggaggtt
tcgggacggacttacccggtcgaaatgatttatcgtcccccgacagtggaccagaatgga
gatgaaccggactggcccaaggccgtggcggacgctgtcagcgaagtctgctcacgcggc
cccggtgacgtcctgctgtttatgccaaccgaacgggaaattcacgaagcggccaaagcg
ctgcgtggtcgcaccttcggcggcagcaaaccagacattctgccgctctatgcccgactt
tccgcggccgagcaacaacgtgtctttcagacggcctccaatcgcagaatcgtgattgcc
accaacgtggcagaatcgtcgctgactgtccctggtattcgctatgtcgtcgacacaggg
accgcgcgaatcagccgctattcgcccaagtccaaactgcaacggctgcctgtcgaacca
gtctcccgggcttccgccgatcagcgggctggtcgctgcggtcgcgtcggtcccggcgtc
tgcattcgactctactctgaagaagactaccagagccgggaacggtacacgcctcccgaa
atcctgcgatccaatctggccaacgtgatcctgcaaaccaagacgctggggctgggagag
attgaagaattcccgtttctggagccccccaagacagagtcgatcaaggacggttataag
acactgttcgaactcggtgcagtcaccgaagaccacaagttgacggaaattggtcgcaag
cttgcgcggttgccggtcgatccccgcatcgcgcggattatctgggccgcacacgaagaa
aattgtctgggcgatgccctgattatcgcgtcagcgctcgaagtgcaggaccctcgtgaa
cgtccactcgaaaagcaaaagcaggcagacgaatcgcatcaacgatttgcggacgaagat
tccgatttcctgagtgatctgaagttgtgggacttctatcacaagctgaaaggagagttg
tcaaagggccaactgcacaaagcctgtcaccagaattttctttcttggacgcggatgcgc
gagtggattgacgtgcacgccgaactggtccagatcgtcagggaatcgatggcgagtgaa
acgcgagggcgggaatcgcgacccgcggcgaatcatacgaacgaatcttccagcaagcag
catggcgctcgtgccgccacagcaggatctcccccattcacaaaacgggccaaacaaccg
gaatccagtgcgacgacgcagaaggtcgacacccttttcgcacgacgccacgacgtcggt
gccattcatcgagcacttctgacgggctacttgtccagcatcgcgttcaagacggagagt
ggtgaataccttgcggccggggggatgaaggcctacctctggcccggttccggactggcc
gcgaagaaaccgaagtggattgtcgccgcagaactggtcgaaacgacgcggcgatttctg
agaacggtggccaagattgatcccgcctggatcgaaccactggcggaacacctgatcgat
cgatcgtatagcgagccgcattgggatccagattcactggccgtcatggcctacgaaaag
gtgacgctcttcggactggtcctggtcccccgtcgacgaatccgatacagccggatcgaa
ccggtgaaatcccgcgagctgttcattcaacatgcgcttgtctacggagaatggccggaa
gatgactccgattccgagccatctcaacgacgtgactactcgaattatcagtcgcggaat
cccgatcgcacgaactcgcaacggggtgctggaaagcaagccccctctcaagggactggc
ggaagcgaaacaaccgcctcacggggttctcgagcggcggttgttcccgctgccgaggga
tcaaccgggcagtcagtcacgacacgattcacggcgccccccgcatttttgattcacaat
cggaagctcgtaaagcaactggaagacctgcagacacgcgtcagacgaggaagtctgctg
aaagccgaacaggctcagttcgatttctacgattcacgtcttcctgctgatgtgaatgac
ggacaccggcttgtgcaatggctccgctcggcagcgccgtccgaccagaagcgattgctc
atggcggatgcggatctactggaagctgatgccatcgtcgccaccaaggaatcgtacccc
gatacgatccagatgaagaatctgtcgcttccgctgacgtatcgactcgacccgagtgcg
cctgatgacggcgtcaccatcaccgttccccaggagggtctcaatcaacttgacggcgag
cgacttggatggctcgtaccgggcctgatcgaggacaagatcgtcgctctgattcggaca
ctacccaaggaacttcgccgggacctggtgccgattcccgaagtcgcagcagaagtcgcc
aaagtagtcttgttcggggagaaatcgctcgaagcagcgatcgtcgaggggattgagttt
gtaaccggaatcgaaattcccgtcaccgccttcgacgagtccaaactgcccgaccacttg
agaatgctgatccgcgtcacagatgcagaaggtcgcacactcgcggcaggacgagacctg
accgccttacggaaagagttcggagcgatcgcgtccgtgagtttctcggcatccgacgat
cctcgctggatccgggacggtatcaagacctgggactgcggtactctccccccagtcatc
gatgtcatgcgccgcggtgtcgcactcaaggggtatccaaccctgatggacaaggaagat
tccgcctccctccgattgctcgacacactggaaaaatcgcagcatgaaatgcggttcggt
gtccggcggctcatcgtactgacggtgtttcgagagttgaaacaacagatcgaccacctg
ccgtcactgcagaattgggcactgtcggccaagtcgttcccccctccgttcccgtttcga
actcaggtgcaggaactgctcgccgatcgggcattcctggcgtccgacaaatttcctcgc
agtgacgctgagtttcgggagtgtctgcgaattggtcggacccgcatgcctgctgcggta
accgagattacgggatttctcacctccctttttcaggcttatgcagaagtccgtcggatc
tgggaaaagaccgctcatccacagtggcagacaacccggctggatgtgcattcgcaactg
gctcagctcttttcacccggttttctggtccggacaccctggccgtggctggtgcagttt
ccacggtatacgagaggaatttcgttgcgacttcagaagctgaccagcggtggcgcagcg
cgagatcagcaattgcagcagcagattgtcctgcggtggcggagagggatcgaacgactg
aaacttcacgcggaccagcatatttacgacccggaactggagagttatcgctggatgagc
gaagaattgcgagtcgcgctgtttgcccaggaactgggaaccagcatctccgtttccgaa
aagaagctggataagcaatgggagaaagtgaagcagtaa
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