Sinorhizobium chiapasense: RB548_05660
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Entry
RB548_05660 CDS
T11111
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
schp Sinorhizobium chiapasense
Brite
KEGG Orthology (KO) [BR:
schp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schp03032
]
RB548_05660 (topA)
03400 DNA repair and recombination proteins [BR:
schp03400
]
RB548_05660 (topA)
Enzymes [BR:
schp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RB548_05660 (topA)
DNA replication proteins [BR:
schp03032
]
Prokaryotic type
DNA Topoisomerases
RB548_05660 (topA)
DNA repair and recombination proteins [BR:
schp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RB548_05660 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
WVT04891
LinkDB
All DBs
Position
complement(1185866..1188541)
Genome browser
AA seq
891 aa
AA seq
DB search
MNVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVRPDEDFEMSWEVDGASAK
RMKDIADAVKSSDGLILATDPDREGEAISWHVLDLLKKKKVIGDKPVRRVVFNAITKKAV
LDAMAEPRDIDISLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDR
EAEIERFVTEEYWNISALLKTPRGDEFEARLVSSDGKRLQPKAIGNGDEANRLKTLLDGA
SYVVESVEAKPVKRNPAPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGL
ITYMRTDGVQMAPEAIDAARRAIGSQFGERYLPEKPRFYSTKAKNAQEAHEAIRPTDFNR
SPDQVRRFLDGDMLKLYDLVWKRGIASQMASAEIERTTAEIIADNGGKKAGLRATGSVIR
FDGFIAAYTDMKEDGEQADDGDEGGRLPEINARENLAKQKINATQHFTEPPPRYSEATLI
KKMEELGIGRPSTYAATVTTLLDRDYVTTDKRKLVPQAKGRLVTAFLESFFTRYVEYDFT
ASLEEKLDQISAGDLNWKDVLREFWKDFFSQIEDTKELRVTNVLDALNEELAPLVFPKRE
DGSDPRICQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQLSSETNGDAEASASNEPLSL
GKDPHTGEEITLRSGRFGPYVQRGEGKDAKRSSLPKGWTPASIDHEKAIALLSLPRDIGA
HPETGKMISTGLGRYGPFVLHNGTYANLDSIEDVFAIGLNRAVSVLADKQSKGANGSRGR
TAAAALKELGEHPDGGAITVRDGRFGPYVNWGKVNATLPKGKDPQSVTVEEALALIAERA
AKGGATKGKATKAKSTTAKTTKAASNGATKTAKPKTAAKAKSKTAAKAKKD
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaatgttgtagtggtggaatcgccttccaaggccaagacgatcaacaagtacctgggc
cccggctacaaggtgcttgcttcgttcggccacgtgcgggacctgccggccaaggatgga
tcggtgcggccggacgaagacttcgagatgtcctgggaggtcgacggcgcttcggcgaaa
cgcatgaaggacatcgccgacgccgtgaaatcgtcggacggcctgattctcgcaaccgac
ccggatcgcgagggcgaggcgatctcctggcatgtgctggaccttctcaagaagaagaag
gtcatcggcgacaagccggtgaggcgcgttgtcttcaacgcgatcacgaaaaaagccgtg
ctcgatgcaatggccgagcctcgcgatatcgatatctcgctggtcgacgcctacctcgcc
agacgcgcgctcgactatctcgtcgggttcaacctttccccggtcctctggcgcaagttg
ccgggcgctcgctcggccggccgtgtgcaatcggtggcactgcgtctcgtctgcgatcgc
gaagcggaaatcgaacgtttcgtcacggaggaatactggaatatttcggcgctcctgaag
acgccgcgcggcgacgaattcgaagcacgtctcgtctcgtccgacggcaagcggctgcag
ccaaaggcaatcggcaatggcgatgaggccaaccggctgaagacccttctcgatggcgcg
agctatgtggtcgagagcgtcgaggcaaagccggtcaagcgcaatccggcgccgcccttc
accacctcgacgctgcagcaggcggcttcctccaagctcggcttctcggcctcccgcacg
atgcaggtggcgcagaagctctacgagggcgtcgatatcggcggcgagaccgtcggtctc
atcacctatatgcgtaccgacggcgtacagatggcacccgaggcgatcgacgctgcgcgc
cgggcgatcggcagccagttcggcgagcggtacctgccggagaagccgcgcttctattcc
accaaggcgaaaaacgcccaggaagcgcacgaggccatccgcccgacggacttcaaccgc
tcacccgaccaggtgcgccgcttcctcgacggcgatatgctcaaactctacgatctcgtc
tggaagcgtggcattgcgagccagatggcttcggccgaaatcgagcggacgaccgccgag
atcatcgccgacaacggcggcaagaaggccggcctcagggccaccggttcggtgatccga
ttcgacggcttcatcgccgcctacaccgatatgaaggaagatggcgagcaggccgatgac
ggtgacgagggcggccgcctgccagagatcaacgcgcgggagaacctcgccaagcagaag
atcaacgccacccagcacttcactgagccgccgccgcgctactcggaagcgacgctgatc
aagaagatggaagaactcggcatcggccgtccttcgacctatgccgcaaccgtcacgacc
ctccttgaccgggactatgtgacgaccgacaagcgcaagctggtgccccaggccaagggc
cgccttgtaacagcctttctggagagtttcttcacgcgctatgtggaatatgatttcacg
gcgtctctggaggagaagctcgatcagatttccgccggcgacctcaattggaaggacgtc
ctgcgcgagttctggaaagacttcttctcgcagatcgaagataccaaggaactgcgcgtc
accaacgtgctcgatgccctcaacgaggaactggcgccgctcgtcttcccgaagcgggaa
gacggcagtgatccgcgcatctgccaggtctgcggaacaggaaaactctcgctgaagctc
ggcaaatacggtgcgttcgtcggctgctccaattacccggagtgcaactacacgcgccag
ctttcctccgaaaccaacggcgatgcggaagcttccgcgtcgaacgagcctctgagcctc
ggcaaggatccacataccggcgaggaaatcacgttgcgcagcggccgcttcggcccttat
gtccagcggggcgaaggcaaggatgcaaagcgctcgagcctgccgaagggctggacgccg
gcatcgatcgaccatgaaaaggccattgcgctgctgtcactgccgcgcgacatcggcgcg
catccggaaaccggcaagatgatctccaccggtctcggccgctacggacccttcgtgcta
cacaacggcacctatgccaacctggactcgatcgaggatgtcttcgcgattgggcttaac
cgggcggtttcggtgctcgcggacaagcagtcgaagggcgccaacggctcccgcgggcgc
accgctgccgcggcgctcaaggaactcggagaacacccggacggaggcgcgatcaccgtg
cgcgacgggcggttcggcccctatgtcaactggggcaaggtcaacgcgacgctgccgaag
ggcaaggatccacaatccgtgaccgtcgaagaggcgctggcgctcattgccgaacgcgcg
gccaagggcggtgcgacgaaaggcaaggcgaccaaggcgaagtcaacgacggcaaagacc
actaaggccgcttcgaacggcgcaacaaaaaccgcgaagccgaagaccgccgccaaggcg
aaatcgaaaacggccgcgaaggccaagaaggactga
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