Sinorhizobium chiapasense: RB548_12350
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Entry
RB548_12350 CDS
T11111
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
schp Sinorhizobium chiapasense
Pathway
schp03420
Nucleotide excision repair
schp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RB548_12350
03430 Mismatch repair
RB548_12350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schp03400
]
RB548_12350
Enzymes [BR:
schp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RB548_12350
DNA repair and recombination proteins [BR:
schp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RB548_12350
MMR (mismatch excision repair)
Other MMR factors
RB548_12350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
DUF4420
AAA_11
Peptidase_M13
Motif
Other DBs
NCBI-ProteinID:
WVT02315
UniProt:
A0ABZ2B494
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All DBs
Position
2534202..2536775
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AA seq
857 aa
AA seq
DB search
MSKGFDDIPFFDEEPAPRKPALAAGGIAARAMAARDKAKRPDYLSGLNPEQTEAVETLEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAFPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPSQIPEGDARAFANGKGRELYAAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLGEYHDKFRYILVDEYQDTNTAQYMWLRLLAQRPRASERSVAGNPGEAQASQGW
PDDVSSAPAERSRASGDSVSAKKPTQQINICCVGDDDQSIYGWRGAEVDNILRFEKDFPG
AKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTERTNPDDEKVHVHAAWDSEEEAR
AIGEEIEQLQRQKHNLNDIAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDA
MAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRTLHDYARARDIPMFAAASDIIETDELK
PKARKALFDVVTDFRRWQTLLETTPHTELAEQILDESGYTAMWQADKSAEAPGRLENLKE
LIRSMEAFESMRGFLEHVALVMDAEQNEDMDAVSIMTLHSAKGLEFDTVFLPGWEEGLFP
HQRALDEGGRDGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQSTMPSRFLDELPID
HVEVAEQDVSYGGYGRGGYGQSRFDKADPFENSYQTPGWKRAQQHRSEATRDNWGTRSGH
AVERIGYGESGPRTRMIEGELVAKSTTSEPSRFNIGDRVFHLKFGNGNIAAIEGNKLTID
FDRAGQKRVLDGFVERV
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggttttgacgacattcccttcttcgacgaagagccggcgccgcgcaaaccc
gcgctcgccgccggcggtatcgctgcgcgcgccatggccgcccgcgacaaagccaagcgc
ccggattatctctccggcctcaatcccgagcagacggaagccgtcgaaacgctcgaaggc
ccggtgctcgtgctcgccggcgccggcaccggcaagacccgcgtcctgacgacccgcatc
gcccatatcctttcgaccggccgcgcctttccctcgcagatcctcgccgtcaccttcacc
aacaaggctgcgcgcgagatgaaggagcgcataggcgtgctcgtcggccatgctgtcgaa
ggcatgccctggctcggcaccttccactcgatcggcgtcaagctgctccgccgccatgcg
gagctcgtgggcttgaggtccgatttcaccattctcgacaccgacgatgtcgtgcggctg
atcaagcagttgatccaagccgaagggctcgacgacaagcgctggccggcaaaacaattc
gccggcatgatcgacacctggaagaacaagggcctcgacccctcgcagatcccggagggc
gacgcgcgcgccttcgccaacggcaagggccgcgaactctacgccgcctaccagaaccgg
ctcctgacgctcaacgcctgcgatttcggcgacctgctgctgcacccgatccggatgttc
cgcgccaatccggacgtactcggcgaatatcacgacaagttccgctacatcctcgtcgac
gagtaccaggacaccaacacggcgcaatatatgtggctgcggctcttggcgcagcggcca
cgggcgtctgagcgatctgtcgcaggaaatccgggcgaagcccaagccagccaaggctgg
ccggacgacgtttcgtccgcccccgcggagcgcagccgcgcaagcggcgacagcgtgagc
gcgaagaaacccacacaacaaatcaacatttgttgtgtgggcgatgacgaccagtcaatc
tatggctggcgcggcgcggaggtggacaacatcctccgcttcgagaaggatttccccggc
gcgaaagtcatcaagctggagcgcaactaccgctcgaccgaacatatcctcggcgccgct
gcgcatctgatcgcgcacaatgaaggccgcctcggcaagacgctcttcaccgaacgcacc
aatcctgacgacgagaaggtgcatgtacatgccgcctgggattcggaggaggaagcccgc
gccatcggcgaggagatcgagcagctccagcggcagaagcacaatctgaacgacatcgcg
atcctggtgcgtgcctcgttccagatgcgtgagttcgaagaccgcttcgtcacgctcggc
ctcaactaccgcgtcatcggcgggccgcgcttctacgagcggctcgaaatccgcgacgcc
atggcctatttccgccttgtctgccagccggccgacgaccttgccttcgagcgcatcgtc
aacacgccgaagcggggcctgggcgacaccacggttcgcacgctgcacgactatgcccgc
gcccgcgacatacctatgttcgccgccgcgagcgacatcatcgagacggacgagttgaag
ccgaaggcgcgcaaggccctcttcgacgtcgtcaccgattttcgccgctggcagacgctg
ctcgaaacgacgccgcataccgagcttgccgagcagatcctcgacgaaagcggctacacc
gccatgtggcaggccgacaaatcggcggaggccccgggacggctcgaaaacctgaaggaa
ctcatccgctcgatggaagccttcgagtcgatgcgcggctttctggaacatgtcgcgctc
gtcatggacgccgagcagaacgaagacatggatgccgtctcgatcatgacgctgcattcg
gccaagggcctggaattcgacacggtgttcctgccgggctgggaggaaggcctcttcccc
caccagcgcgcactcgacgagggcggccgcgacggcctcgaggaagaacgccgcctcgcc
tatgtcggcatcacccgcgccaagcgccgctgccatatctggttcgtctcgaaccgccgc
atccacggcctctggcagtccaccatgccgtcccgcttcctcgatgaactgccgatcgat
cacgtggaagtggctgagcaggacgtctcctatggcggctacggacgcggcggttacggg
cagtcgcgcttcgacaaggccgatcccttcgagaactcctaccagacccccggctggaag
cgcgcccagcagcaccgctcggaggccacccgcgacaattggggcacccgctccggccac
gccgtcgagcgcatcggctacggcgagtccgggccgcgtacccgcatgatcgagggcgaa
ctggtcgccaagtcgaccacctcggaaccgtcccgcttcaacatcggcgaccgcgtcttc
cacctcaaattcggcaacggcaacatcgccgcgatcgaaggcaacaagttgacgatcgat
ttcgatcgggccgggcagaaacgcgtgctggacgggtttgtggagcgggtgtga
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