Sinorhizobium chiapasense: RB548_13850
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Entry
RB548_13850 CDS
T11111
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
schp Sinorhizobium chiapasense
Pathway
schp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RB548_13850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schp03019
]
RB548_13850
Enzymes [BR:
schp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RB548_13850
Messenger RNA biogenesis [BR:
schp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RB548_13850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WVT02595
LinkDB
All DBs
Position
2864545..2866062
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AA seq
505 aa
AA seq
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MSTFKELGLSQQILATLSANGFEKPTPIQTQAIPVVLKGHDLIGLAQTGTGKTAAFGLPM
IERLVADGKRADPRNIRALVLAPTRELVNQIATNLKVFVRKTPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVNRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKN
RQTLLFSATMPKQIAELAGEYLTDPVKVEVTPPGKAADKIEQYVHFVPGKDLKTSILKQS
LSDNPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCTPDEIRLLRD
IEKLMGIQIAIASGEAPADQARPSKGRGGRGNGQRHGNGGGHRQEGRPQRERPAREPASA
PSSFAGDDLLREERRPQKHDRRDQRQPGHGHHDGRSEGNRNHEGRKHHGRPGSKHEGRHH
RDGQPGKRHEGGRGNRRTDNGVRQG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacattcaaagagcttggcctctcccagcagattttggcgacgctttccgccaat
ggctttgagaagccgacgcccattcagacgcaggccattcccgtcgtcctcaagggtcac
gacctcatcggtctcgcccagaccgggaccggcaagacggccgccttcggcctgcccatg
atcgagaggctggttgccgatggcaagcgcgccgacccgcgcaatatccgcgcgctcgtt
cttgctccgacccgcgaactcgtcaatcagatcgccaccaacctcaaggtcttcgtcagg
aagacaccgctcaagatcggcgtcgtcgtcggtggcgtctcgatcaacaagcagaccgaa
cagctcgcccgtggcgtcgacatcctcgtcgcgactccaggtcgcctgctggatctcgtc
aaccgcaaggcggtgacgctcactcagggtcgctatctcgtgctcgacgaggccgaccag
atgctcgatctcggcttcatccacgacctgcgcaaaatcgcgaagctcgtgcccaagaat
cgccagacgctgcttttctcggcgaccatgccgaagcagatcgccgaactcgccggcgaa
tacctgaccgatccggtcaaggtcgaagtcacccctccgggcaaggccgccgacaagatc
gagcagtacgtccacttcgtgcccggcaaggacctgaagacctcgatcctcaagcaatcg
ctttccgacaatcccgatggcctttcgctcatcttcagccggaccaagcacggcgccgag
aagctgatgaagcatctggaccacgtcgggttcaaggccgcgtcgatccatggcaacaag
agccagggccagcgcgagcgtgcgctgaaggccttccgcgacggtgaaatccgcgtgctc
gttgcgaccgatgtcgccgcccgcggcatcgacattccgggcgtcacccatgtctacaac
tacgacctgccggaagtcccggacgcctacgtccaccgcatcggccgcacggcccgcaac
ggccgcgacggtatcgcgatcgccttctgcaccccggacgaaatccgcctgctccgagac
atcgagaagctgatgggcatccagatcgccatcgccagcggcgaggcaccggccgaccag
gcgcgtccgtccaagggacgcggcggtcgcggcaacggccagcgtcacggcaacggtggc
ggccaccgacaggaagggcgtccgcagcgcgaacgtccggcgcgcgagccggcgtcagcc
ccgtcgagctttgccggcgacgatctgctgcgcgaggaacggcgtccgcaaaagcacgac
cgccgcgatcagcgccagccgggccacggccatcatgacggccggtcggaaggcaatcgc
aaccacgaaggccgcaagcaccacggccgtccgggatcgaagcacgagggccggcaccac
cgcgacgggcagcccggcaagcgccatgaaggcggccgcggaaaccgtcgcaccgacaac
ggtgttcgccagggctga
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