Sinorhizobium chiapasense: RB548_22420
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Entry
RB548_22420 CDS
T11111
Symbol
nifA
Name
(GenBank) nif-specific transcriptional activator NifA
KO
K02584
Nif-specific regulatory protein
Organism
schp Sinorhizobium chiapasense
Pathway
schp02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
schp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
RB548_22420 (nifA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schp03000
]
RB548_22420 (nifA)
Transcription factors [BR:
schp03000
]
Prokaryotic type
Helix-turn-helix
Other families
RB548_22420 (nifA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
GAF
GAF_2
AAA_5
AAA_2
Mg_chelatase
AAA
AAA_3
HTH_28
GAF_3
HTH_23
Parvo_NS1
Motif
Other DBs
NCBI-ProteinID:
WVT06369
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Position
pSchITTGS70b:complement(199866..201605)
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AA seq
579 aa
AA seq
DB search
MLHGRFEEGGRSESGTKNKADPFVSGIYQISKVLTAPTRLEITLTNVVNILSSMLEMRDA
AIVVLENETEPEIVATAGITPSPHSGSGRVVSRAAIDAIVATGAPVVIQDASKSELLQPD
RQASPSGTTIPGRFIGVPVKAERKILGTLSIVRVRGDTTNIPYDDDVGFLTLIANLVGQT
IWLHRSFGIDDKRLTEEQRRDENSPDGERNDIGGRLPAKIDWIVGESPAVKEVLATVSAV
APTNTTVLLRGESGTGKELFAQAIHELSPRRKKPFVRLNCAALPEGVLESELFGHEKGAF
TGAISQRAGRFELANGGTLLLDEIGEISPTFQAKLLRVLQEGELERVGGTRTLKVDVRLI
CATNKNLETAVANGEFRADLYYRINVVPIVLPPLRDRPGDISRLAKVFLKRFNKENGREL
TFAPSALDVISQCRFPGNVRELENCVRRTATLAPSTTIVSSDFACKNSQCHSALLWKGSN
GSFGDMGSGEPTRESTVSGGSPFAAGCAGASLGEVSSKACDPNDPACPAIGARLTERERL
IDAMERSGWVQAKAARLLGLTPRQIGYAIRRYQIEVKKF
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgctgcacggtcggttcgaagaaggagggcggtctgaatcaggcacaaaaaacaaggcg
gatccctttgtcagcggaatttaccagatatcgaaagtcctgaccgcacctacccggctg
gagatcacgctcaccaatgtcgtgaacatcctctcctcgatgctggaaatgcgtgacgca
gcaatcgtcgtcctggaaaatgaaaccgagcccgaaattgtcgcgactgcgggcattaca
ccctcacctcattccggcagcggccgagttgtatcccgggccgcaatagacgcgatcgtt
gctaccggagcaccggtcgtcatacaggatgccagcaagtcggagctccttcagcccgac
cgtcaagcgtctccaagcggcaccaccatcccgggccgctttatcggtgttccggtaaag
gccgagcgcaaaatacttggcacattatcgatcgttcgcgtcaggggcgacaccaccaac
attccctatgacgatgacgtcggctttctcacactgatcgccaaccttgtcggccagacg
atctggctccatcgcagttttggcatcgatgataagcggctcacagaggagcaacgcagg
gacgagaactctcccgacggtgagaggaacgacatcggcgggcggctgcctgccaagatc
gactggatcgtcggggaaagccccgcagtcaaggaggtgctcgcaaccgtttcggccgtg
gccccgaccaataccaccgtactcctgcggggcgaaagcggcaccggcaaggaactcttt
gcacaggccatccatgagctttcacctcgaaggaagaagccctttgtaagattgaactgc
gccgcactgcccgaaggcgttcttgaatcggagctgttcgggcatgagaagggtgccttc
accggggccatctcgcagcgcgcgggccgtttcgaactggcaaacggcggaacactgttg
cttgacgagattggcgaaatctcgcctacatttcaggccaagctgttgcgcgtcttgcag
gaaggtgaactggagcgggttggcggcaccagaacgctaaaggtcgacgttcggctcata
tgcgccaccaacaagaatctcgaaacggctgtcgccaatggagagttcagggctgatctt
tattaccgcatcaatgtagtgccgattgtgttgccgccgctcagggatcgacccggcgac
atttctcgccttgcgaaagtcttcctcaagcgattcaacaaggagaatggccgcgaactg
acattcgcgccctcggcgcttgacgtaatctcgcaatgccgcttccccgggaacgtccgt
gaactagaaaactgcgtgcgaaggacggcaactctcgcgccgtcaacgacgatcgtttct
tcggatttcgcctgcaagaacagccagtgccactctgcgcttctgtggaagggatccaac
ggttcatttggcgatatgggcagcggtgagcccaccagagagagcacagtgtcgggtgga
tccccgtttgcggccgggtgcgccggcgcctctctaggcgaggtctcctccaaagcttgt
gatccgaacgatcctgcctgccccgcaatcggtgcgcgtctgactgagcgcgaacggctg
atcgacgcgatggagagatccggctgggttcaggccaaagcggcccgccttctaggcctc
acaccacgtcagattggttatgccatccgccggtatcaaatcgaggtgaagaagttctaa
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