Staphylococcus chromogenes: DWB92_09935
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Entry
DWB92_09935 CDS
T06648
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
schr
Staphylococcus chromogenes
Pathway
schr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DWB92_09935 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schr03019
]
DWB92_09935 (rnr)
03016 Transfer RNA biogenesis [BR:
schr03016
]
DWB92_09935 (rnr)
Enzymes [BR:
schr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DWB92_09935 (rnr)
Messenger RNA biogenesis [BR:
schr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DWB92_09935 (rnr)
Transfer RNA biogenesis [BR:
schr03016
]
Prokaryotic type
tRNA degradation factors
DWB92_09935 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
Rho_RNA_bind
OB_Dis3
RNase_II_C_S1
TBPIP_N
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
QDW82932
LinkDB
All DBs
Position
complement(1996013..1998367)
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AA seq
784 aa
AA seq
DB search
MNLKSQIKAIVERTSYEPMSVSDFQDALGLSSAESFRDLIKVLNELEQEGKVKRTKQDRY
QKQGPKPGLVRGTLSQNKKGFAFLRPDEEGIEDIFIPPTKINRAMDGDTVIVEVKKSRGD
HRKGKVEGEVKSIETHSVKQVVGTYTEARHFGFVVPDDKRIMQDIFIPKGQDLGAVDGHK
VLVQITQYSDGSNNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDDVLKEAEAVPET
ILPSEIEGRRDLRQDLTITIDGADAKDLDDAIAIKKLPNGNMELTVSIADVSYYVKEGSA
LDREAYDRATSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTMSCRMEINSRGEVVQHDIF
DSVIHSDARMTYTEVNEIITEQNAVTREKYKEITPMLDLAQQLSQQLIQMRRRRGEIDFD
IKEAKVLVNEEGIPQEVVARERGEGERLIESFMLAANETIAEHFSKMEVPFIYRVHEQPK
SERLRQFFDFITNFGIMIKGTGEDIHPSTLQNITQEVEGRPEDRVISTMMLRSMQQAHYD
ADNLGHFGLAADYYTHFTSPIRRYPDLIVHRLVRKYLIEKSMNGKAQHEWQEKLPQMAEH
TSNRERRAIDAERDTDDLKKAEYMIQHLGDEFEGVISSVANFGMFVELPNTIEGMVTIQN
MSDDYYHFDERQMALIGERKASVYRIGDVIKVKVIHVDVDERQIDFQIVGMPLDVNPKRE
KKSRGTTIQAKTKGNTFEKDKSNKKKRKQRKGKHARKREKSGNTKHKPFYKDKRVKKKGK
KKKK
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgaacttaaaatcacaaattaaagcgattgtcgaacgtaccagttatgaacctatgtcg
gtgtcggattttcaagatgcgctaggactcagtagtgccgaaagttttcgtgatctcatt
aaagtcctaaacgagcttgaacaagaagggaaagtcaagcgtactaaacaagatagatat
caaaaacaaggtcctaaacccggactagtaagagggacgttaagtcaaaataaaaaagga
tttgcctttttgcgaccagatgaagaaggcatagaagacatttttattccaccgacaaaa
attaatcgtgccatggatggcgatactgtaatagttgaagtgaaaaaatcgcgtggtgat
caccgcaaagggaaagttgaaggcgaagtaaaatcgattgaaacccattcagtgaaacaa
gtcgttggtacctacacagaagcgcgacatttcggttttgtcgttccagatgataagcgt
attatgcaagatatcttcatccctaaaggtcaagatttaggggcagttgatggtcataaa
gtactcgtgcaaatcacgcaatattctgatggatcaaacaatccagaaggacatatttca
gcgatattaggacataaaaatgaccctggcgtagatattttatctatcatttatcaacat
ggaattgaaattgaatttccggatgatgttttaaaagaagctgaagccgtaccagaaact
attttgccgtctgaaattgaaggacgtcgtgatttacgccaagatttaactataacaata
gacggcgcggatgctaaagatttagacgatgcgattgccattaaaaagcttccaaatggg
aatatggaactaacagtgagtattgcggatgtgagttattatgttaaagaaggctctgcc
ttagatcgtgaagcttatgaccgtgccacaagtgtttatttggtggaccgcgttatcccg
atgattccccaccgattaagtaatggcatttgttcattaaatccaaaagtagaccgttta
acgatgagctgtcgcatggaaatcaacagtcgcggagaagtagtccaacatgatattttc
gatagtgtcattcattcagatgcgcgtatgacctatactgaagtgaatgaaattattaca
gaacaaaatgctgtgacacgtgaaaaatataaagagattacacctatgttagatttagca
caacaactttcccaacaactgattcagatgcgccgtcgtcgaggagaaattgattttgat
attaaagaagcgaaagtcttagtcaatgaagaaggcattccccaagaagtggttgcacgt
gagcgtggcgaaggggaacgattaatagaatctttcatgttagcagccaacgaaaccatc
gccgaacactttagtaaaatggaagttccatttatttaccgtgtccatgaacaaccaaag
tctgaacgtttaagacaatttttcgactttatcacaaactttgggattatgattaaaggg
acaggggaagatattcatccaagcacacttcaaaatattacacaagaagtggaagggcga
cctgaagaccgtgtcatttcgacaatgatgttacgttcgatgcaacaagcccattatgat
gcagataatttagggcattttggactagcagcagattattatacgcattttacttctccg
attcgccgttatcctgaccttattgttcatcgtttagtacgaaaatatttaattgagaaa
tcaatgaatgggaaagcgcaacacgaatggcaagaaaaactccctcaaatggcagaacat
acgtcaaaccgtgaacggcgagcgattgatgccgaacgggatacggatgatttgaaaaag
gctgaatatatgattcaacacctcggtgacgaatttgaaggtgtcattagttctgtagcc
aattttggaatgtttgtcgagttgccgaatacgattgaaggtatggtcacgattcaaaac
atgtcagatgattattatcattttgatgaacgtcagatggcgttgattggagaacgaaaa
gcatctgtttatcgtattggagacgttattaaggtaaaagtcatacatgtagatgtagac
gaacgacaaattgattttcaaattgttggcatgcctttagatgtcaatcctaaacgtgag
aaaaagtcacggggcacaacgattcaagctaaaacaaaaggcaatacattcgaaaaagac
aaatctaataagaaaaagcgcaaacaacgtaaaggtaaacatgcaagaaagcgtgaaaaa
tcaggaaatacgaaacataaacctttctacaaagacaaacgtgttaaaaagaaaggtaaa
aagaagaaaaagtaa
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