Siniperca chuatsi (mandarin fish): 122861415
Help
Entry
122861415 CDS
T08948
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
schu03036
]
122861415 (dicer1)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122861415 (dicer1)
microRNA pathway
RISC loading complex
122861415 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
122861415
NCBI-ProteinID:
XP_044021715
LinkDB
All DBs
Position
LG15:complement(2431226..2506415)
Genome browser
AA seq
1904 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQENAKRTVFLVNTALCVVQQAAAVRTHSDLQVGEYTDLEET
SAWTDQKWNQEITENQVLVMTCHIFLHVLRNKILQLSKINLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASILNGKCDPSELEQKIQNLERILKSNAETATDLVVLDRYASQP
REVVLDCGPYLDKSGLSSRLQVELDEALHFLNDCNISVARDDRDPTFISKQVLSDCRAVL
QVLGPWCADKVAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDEDEDEEVEAKERP
EANFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKAFEEDLTTYKAIEKILRNKCSKSVEVSEFEVEQVLDDDNI
LPPYVLRSEDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTVETPNGRFQSTLYLP
INSPLRVPVKGPAMICARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVIGMVLTTPLPDELNFRRR
RLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTAAQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSNTLAMDFKFMEDIEKSEARTGIP
TTQYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPESCSEDGEGHCKHQETVTPDPNFPTHPSSHHSTLTEQGP
LEPGEATCTRNLTNGTALVASCDDDGHQDEHLHQHDNCQRSQSSSPGLQSPESMQTTTSV
SVQPSHSLKKPSSSPPQPSDECTPGRTSDHTNKATSVCSRAAMGPNPSTAPSPDLAAVPQ
HRAQAEDSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDA
HEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYMVNQDKSSTDKLD
SEEAKEELLANGQSGNDYDEDDEEGEEVDEDSELMLKDEPKDEVNMEDDLEYYKEHIKFI
DNMLLGSGAFGKKISLSGFPPSLTPASGSSPAMESPYEWKAPKKTLHPTTAHYPSEPAPS
GPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGVELGKQSISYDLHTEQCI
ADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGTLKGTTVPSRQIIAIDLC
YGWLKIPPRCMLDHPDAERTLNHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTIT
DCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYF
KAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGA
IYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKV
RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQNN
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagcttgtcacccctgccacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgataatatctatacgcctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactatcgtctgcttaaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattaccaa
gaaaatgcgaagaggacagtatttctggtgaacacagctttgtgtgtagttcagcaagca
gctgcagtcaggactcactctgacctccaggtgggagagtacacagatttggaggagacc
tcagcatggactgaccaaaagtggaatcaagagataaccgagaatcaggtgctggtcatg
acttgccacatattcctacatgttctgaggaataaaatcttacagttgtctaaaatcaac
ttggtggtttttgatgattgtcacctggccatcacagaccacccctactgtgagataatg
aagctgtttgagggctgctcatgcagtcctcgtatcctgggtctcacagcttccattctg
aatggaaagtgtgacccgtcagaactggagcagaagatccagaatctggagagaatcctg
aagagcaacgctgaaactgccactgaccttgtggtcctggacagatacgcctctcagcca
agagaagtggtgctggactgtggcccctacttggataagagtggcctctcctctcgtctg
caggtggagctagatgaagctctccacttcctgaatgactgcaacatatctgttgccaga
gatgaccgtgatcccacattcatctccaaacaggtcctgagtgactgccgggccgtgctg
caggtgctgggaccctggtgtgcagataaggtggcaggcatcatggtgcgggagctccag
aagtacatcaaacacgagcaggaggagctcaaccgcaagtttctgctatttactgacaca
atcctacgcaaagtacatgccctctgcgaggagcacttctcccccgcttcattggacctc
aagttcgtcacccccaaggtcctccggctgctcgagatcctgcacgaatacaagcccttc
gagcggcagcagtttgaaagcgtggagtggtacaacaaccgcaaccaggacaactatgtg
tcctggagcgactctgaggatgaagacgaggatgaggaggtggaggccaaagagaggcct
gaagccaactttccctcaccattcaccaacatcctgtgtgggatcatctttgtggagaga
cgttacacagctgttgtcctcaatcgtctgatcaaagaggcgggaaagcaggacccagag
ctggcttacatcagcagcaacttcatcaccggccacagcatcggaaaaaaccagccacgg
aacaagcagatggaggtggagttcaggaaacaagaggaggttctccgcaaattccgggct
catgaaactaacctgctgattgccaccagcatcgttgaggaaggcgtggatattccaaag
tgtaacctggtggtgcggtttgacctgcctacagagtacaggtcctacgtccagtccaaa
ggcagagctcgggcacctgtctccaactacatcatgctggctgacagtgagaggaccaaa
gccttcgaggaagatctcactacctacaaggccatagagaagatcttaaggaacaagtgc
tccaagtcagtggaggtgagtgagtttgaagtggagcaggtgctggacgatgacaacatc
ctcccaccctatgtgcttcgatctgaggatggaggtccccgggtaaccatcaacacagct
attggacacattaacaggtattgtgctcggctgcccagtgacccattcacccacttagca
cctaagtgtaaaactgtggagacgccgaacggacgtttccagtccacactctatttacct
atcaactcccctctgcgagtccctgttaagggtcctgcaatgatctgtgccaggctggca
gagaaagcagttgcactagtatgctgtgagaaactccacaaaataggtgagctggatgat
catctgatgccggtggggaaggagacagtgaagtatgaggaggagctggaccttcatgat
gaggaggagaccagcgtaccaggccggcccggctctactaagaggaggcagtgctaccct
aaagccataccagagtgtctgcgggacagttacgctgtaccagagcagacttactacctg
tatgtgattgggatggtcctcaccacccctctccctgatgaactaaacttccgcagaaga
aggctctacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaatcccccatttcccggtgtatactcgctcgggtgaggtgaccatctccatcgag
ctgcagaagtctggcttcacactcaccgctgcccagctcgacctcatcacccgcctgcac
cagtatatcttctcccatatcctccgcctggagaaacctgcactggagttcaagcccaca
ctggctgactcggcttactgcgttctacctctgaatgttgttggggactccaacacacta
gctatggactttaagttcatggaggacattgagaagtctgaggcccgcactggcattccc
accactcagtacaccaagcagaaccccttcaccttcaagcttgaggactaccaggatgct
gtcatcattccaaggtatcgtaactttgaccagcctcatcgcttctatgtcgctgatgtg
tacacagacctgacgccgctcagcaagtttccttcaccagagtatgagacatttgcagag
tactacaaaaccaagtacaacctggacctgtcgaacctgaaccagccgcttctggacgta
gaccacacctcatccagactgaacctgttaacccctcggcacctgaaccagaagggcaaa
gcactgccactcagcagtgcagaaaagaggaaggccaagtgggagagtctgcagaacaaa
cagatcctggttccagagctgtgtgccatccaccccatccctgcctccctgtggaggaaa
gcagtgtgtctgcccagcatcctctaccgcctccactgcctcctgaccgctgaggagctc
agagcccagacagccagtgaagctggagtgggagcccagaccctcccccctgacttcagg
tatccaaacctagactttggctggaagagatctattgacagcaaaacgttcatctcctgt
cctgagtcctgcagcgaggatggtgagggtcactgtaagcaccaagagactgtaacccct
gaccccaatttcccaacacatcccagtagtcaccactctaccctgacggagcaggggccc
cttgagcccggagaagccacctgcacgaggaacctaacaaacggcactgccctagtcgcc
agctgtgatgacgacggacaccaagatgagcaccttcaccaacatgacaattgccaacgc
tcccagtccagctcccctgggctgcagagccctgaatcaatgcaaaccactacctcagtt
tctgtgcagccctctcacagcttgaagaagcccagctccagtcctccacagcctagtgat
gaatgtacaccagggaggacctctgaccacacaaataaagctacctcagtctgcagccgg
gcagccatgggtcccaacccttccacagcaccttctcccgaccttgccgctgtcccccag
cacagagcccaggcagaagactcccccaaaagccttgggcccaacccgggcctcatccta
caggccttgacactatccaatgccagcgacggcttcaacctggagcggctggagatgctc
ggagactctttcctcaagcatgccatcaccacatacctgttctgtacctaccccgacgct
cacgagggacgactcagctacatgcgcagcaagaaggtgagcaactgtaacctctaccgt
ctggggaagaagaaggggctccccagcaggatggtggtgtccatcttcgacccccctgtt
aactggctgcctcctggctacatggtcaaccaggacaagagcagcacagacaaactggat
tcagaggaggccaaagaggagcttctggccaacgggcagtctggaaatgactacgatgag
gacgatgaggagggtgaggaggtggatgaggacagtgagctaatgttgaaggatgagcca
aaggatgaagtcaacatggaggacgatctggagtattacaaggagcacatcaaattcatt
gacaacatgttgttgggatctggtgcatttggtaagaagatctctctgagcggcttccct
ccctctctaaccccagcctcgggctcctcccctgccatggagtctccgtacgagtggaaa
gcccctaagaagaccctccatcccaccacagcccactacccctcagagccagcacccagc
gggccctctgccgaggagtttgactacagctcatgggacgccatgtgctacctggatccc
agcaaggctggagaggaggacgactttgtggtgggtttttggaatccgtcagaagagaac
tgtggcgtcgaacttggcaagcagtccatctcctacgacctgcatacagagcagtgcatc
gccgacaagagcattgctgactgtgtggaggctctgctgggctgctacctgaccagctgt
ggagagagagccgctcagatgttcctctgctcactgggcctcaaggtgttaccattggag
agagggaccctgaaaggaacaacggtgccaagccgtcagatcatagccatcgacctgtgc
tacggctggctgaagatcccgccccgctgcatgctggaccatccagatgcagagcgaact
ctcaaccacctcatctctggcttcgagaactttgaaagaaagatcaactacacctttcag
aacaaggcttacctcctgcaagccttcacccacgcttcctaccattacaacaccattaca
gattgttaccagcggctggagttccttggtgatgcaattctagactacctcataacaaag
cacctttatgaagacccgcggcagcactctccaggcgtgctgaccgacttgcgctcagca
ctcgtcaacaacaccatctttgcctctctggccgtcaagtacgactaccacaagtacttc
aaggccatctcaccggagcttttccacgtcattgacgactttgtgcagtttcagttggag
aagaatgagatgcaaggcatggactccgagctacgacgctctgaagaagacgaggagaag
gaggaggacattgaggtccctaaagccatgggggatatctttgagtcactagccggagca
atttacatggacagcaggatgtcattggagacggtgtggcaagtgtattatccaatgatg
aggccacttatagagaaattctctgccaatgtgccacgctctcctgtgagagagctgctc
gagatggaaccagaaactgccaagttcagccctgcagagagaacgtatgatgggaaagtc
cgggtgacggtggaggtcgtcggtaagggcaagtttaaaggagttggccgcagctaccgg
atcgccaagtcggcggcggcacgaagagctctgcgcagcctcaaagccaatcaacctcag
gtccaaaacaactga
DBGET
integrated database retrieval system
