Siniperca chuatsi (mandarin fish): 122862439
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Entry
122862439 CDS
T08948
Symbol
pabpc4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122862439 (pabpc4)
09123 Folding, sorting and degradation
03018 RNA degradation
122862439 (pabpc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122862439 (pabpc4)
03041 Spliceosome [BR:
schu03041
]
122862439 (pabpc4)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122862439 (pabpc4)
mRNA cycle factors
Stress granule specific factors
122862439 (pabpc4)
Spliceosome [BR:
schu03041
]
Complex C
Other components
Complex C specific factors
122862439 (pabpc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
OB_RNB
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
122862439
NCBI-ProteinID:
XP_044023879
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All DBs
Position
LG15:10307372..10315943
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AA seq
628 aa
AA seq
DB search
MNTAATGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMDDDRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYE
KHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKFELLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQPTSGYFMPAVPQAQNRT
TYYAPNQLAQMRPNPRWQQQGGRGQGGFQGIPGSLRQPGPRANLRHMTPNSGTQGPRATG
QNMGPRPSMGVPGPRAMPPYKYATGVRNPNPQVVQPIALQQAQPAVHVQGQEPLTASMLA
AAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAV
AVLQAHQAKKDATQKVGTMATTAATATS
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgcagcgacagggagttatccgatggcttctctctacgttggcgacctgcac
cccgatatcacggaggctatgctgtatgagaaattcagcccagccggaccagttctctcc
attcgggtatgccgagacatgattacccggcgatctctgggatacgcttatgtgaacttc
tcccaacccgctgacgctgagcgagccttggacaccatgaactttgacgtggtgaaaggg
aagccaatcagaatcatgtggtcccaaagagatccctccctcaggaagtctggagtgggc
aacgtgttcatcaagaaccttgacaagtctattgacaacaaagccctgtacgacaccttc
tctgcctttggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggctccaagggc
tacgcttttgtccactttgagacccaggatgctgctgaccgtgccattgagaagatgaac
ggcatgcttctgaatgaccgcaaggtgtttgtgggtcgtttcaaatctcgcaaggaacgg
gaggctgaacttggtgcgaaagccaaggagtttaccaatgtctacatcaagaacttcggg
gatgatatggatgatgatcggctgaaggagctttttgacaaatatggtaaaacactcagt
gtgaaggtgatgacagaccccaccggcaaatccagaggctttggattcgttagttacgag
aaacatgaagacgctaacaaggctgtagaggacatgaatggcaccgaactcaacggcaag
actgtgtttgtgggccgggctcagaagaagatggagcggcaggcagagctgaagaggaag
tttgagctgctgaaacaagagaggatcagtcgttatcagggtgttaatctttacattaag
aacctggatgacaccatagacgatgagaaactgcgtaaggagttctctccattcggatct
attacaagtgctaaggtgatgctagaggagggtcgctccaagggctttggctttgtctgc
ttctcctcccccgaagaggctaccaaggccgtgactgagatgaatggacgtattgttggc
tccaaacccctctacgtggctctcgctcagcgcaaagaggagcgcaaagcccacctcacc
aaccagtacatgcagcgtattgctggcatgagggccatgccggctaacgccatcattaat
cagttccagcccaccagtggctacttcatgccagctgtgccacaggcccagaataggact
acatactatgcccccaatcagctggcccaaatgcgacccaacccccgatggcagcaacaa
ggtggcagaggtcaaggtggtttccaagggatacccggctcgctgcgtcagccaggaccc
cgtgccaacctgagacacatgactcctaatagcggcacacagggcccacgagctactggc
cagaacatgggtcctcgtccctcaatgggagtccccggcccccgtgccatgcctccttac
aaatatgccactggtgtccgtaaccccaacccccaggtggtgcagcctattgccttacag
caggctcagccagctgtgcacgtccagggccaggagcctctcacagcctccatgctggct
gctgcgccccctcaggagcagaaacagatgctaggtgagcgtcttttcccgctgattcag
gccatgcatgccaacctggcaggaaagatcactggcatgctgctggagattgacaactct
gaactgcttcatatgctggagtctcatgaatctctgcgttcaaaggtggaagaagccgtc
gccgtgctacaagcccaccaggcaaaaaaagacgccactcagaaagtgggcaccatggct
actactgctgctactgccacatcctaa
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