Siniperca chuatsi (mandarin fish): 122862467
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Entry
122862467 CDS
T08948
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122862467 (scaf8)
03041 Spliceosome [BR:
schu03041
]
122862467 (scaf8)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122862467 (scaf8)
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122862467 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122862467
NCBI-ProteinID:
XP_044023943
LinkDB
All DBs
Position
LG15:10864788..10895034
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AA seq
1421 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIATFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIPPPSVTPVMPSSAAPVNNTTPGTPATPATPANIVQGLPDWAS
QITNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERSEDSKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDSIFGQENSVATAQSSSQAQLPEPE
NKLDDSIDNQQQDMDLDEGPDGMEEEIFEEEEKKIVSTRSRTRSRSRSRSPKRRRSRSRS
GSRKRKHRKRSRSRSRDRKRKTSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEYGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIG
SKIIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWE
AAKNSEPAKEVTSQPGSAETTAASNTQTETYAQQVTMMPVQLPVAQAVPSAVGLVPPSFP
VTMGIPPPGYGPPPPFIRAGFNTSQPPPGFMQAAQTAGMASATTSLVQSSVATSQEAVKE
SPFSAMIPPTSTIPGSFMASAIPGAGVFNPVGVQTQHATNEKTAQSAEGMDAAAELTLQG
MQNAVRSGMGLLGMHPTASLTHPLHQSGLAGQRMPGLLPLDVRPNLLQPGVAARFPLLMQ
QGPVQQAAGLLDSALQAHARARAPFSQLDPFNRAPNLTNENVSKTEDESSSGADEGKDQD
YRFPPMEKQSTGLLRTPPPEHREPLGGGGGAGGGVGGRPPLLQTPGTQPARTSLVGRLQA
LAGFTPDNRWNQTRGDFDERDGMRGGLQAPGGPKGFQEERPTTGQNFPSRFDSRPGTAGG
AGGAAGVPGNAGAVGGPQAWNRSGGATAPFDSELNQDLDDRRRSWDRQRDRDERDFDFRR
EMNGNRHSRERERERERDRERGRDRTREPERERDRDKERDRERERERGSWTPLLPLPTPL
LPTPPLNPNLSLNQGKLLAPLKFNPQIQPRFQSPLPQAQAKPSLLGLNQPLPQVQIKSPP
SSQSQAAVPEPQSETPAPSETPQAQSPPSAQSPDPSSDNKGQSQLTEAPTEAESSPQTPS
QTESPFQLMAQSPSKTTSSPDSETPSQASPLVEASSQDSPVAFTQAASPPEETTHSLEEQ
ESPQKDEESSQESASSPQPQWGNVPGMDNNTVAEPTPEASPEPSPEPAQEPSSNSVLPES
EPEQQQEQLDSPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagcatttaacaatgagttgtactcattgaacgagtacaagccgccc
atctccaaggccaagatgacccagatcaccaagtctggaatcaaggctataaaattctac
aagcatgttgtccagagtgtggagaagttcatacaaaagtgcaaaccagaatacaaggtc
cctgggctgtacgtcatcgactcgattgtcagacagtcgcgacaccagtttggcacggag
aaagatgtttttgccccacgcttcagcaagaatatcattgcaacgttccagcacctctac
cgctgcccttcagatgataagagtaagatagtgagagtcctgaacctgtggcaaaagaat
gcggtcttcaagagtgacatcatccagcctctgttggacatggcagcagggattccccct
cccagcgtcacacctgtcatgcccagcagtgctgccccagtcaataacactacacctggc
accccagctaccccggctaccccagctaacatagtccagggtctgcctgattgggcttcc
cagattaccaacacagacactgtggctgctgtggcacagatcctacagagtccccaggga
caacagctgcagcagctggtacagagtctacagatgcagcagcagaagccccagccgtcc
ctgttgcaggccttggatgctggcctggtggtgcagttgcaagctctgacagctcaactc
actgccgccgctactgccaacagcctcaaccccctggagcagagagtctcctcttttaat
aagaaacttctgggtccttttgattttgggaatgattctgaacgcagcgaagactctaaa
aaagacagctcatcatctcaactgcccatggtgtcagagcccatcaacagctccctcttc
catcagctggctgagcagctacaacagcagaacctggagcagtttcagaagcagctttta
gagcaccagcaacaccaacaaaaggcaatgagcatagaagggcaggactcaatctttggg
caagagaactcagttgcgactgctcagagcagcagccaggcacaacttcctgagccagag
aacaagttggatgactccatagacaaccaacagcaggacatggatctggacgagggccct
gatggcatggaggaggagatctttgaggaagaggagaagaagattgtgagcacacgctcc
agaacacgctcaaggtcacgctctaggtctcccaagaggagaaggtccaggtcccgctcc
ggctcacgtaaacgtaaacaccgcaagcggtcacgctcacgctccagagaccgcaagagg
aagacatcacggtcttactcaagtgaaagacgcgcccgagagcgagagaaggagcggcag
aagaaaggactgcctcccatacgatccaagactctaagtgtgtgcagcacaactctgtgg
gtgggccaggtggacaaaaaggccactcagcaagacctcaccaacttatttgaagagtat
ggccagattgagtcgatcaatatgatccctcccagaggctgtgcctacatctgtatggtc
cacagacaggatgcgtaccgtgcccgccagaagctcagcaccggctcctttaagattggc
tccaaaatcatcaagattgcatgggctctgaacaaaggggtaaagcaggagtacaagcag
ttttgggatgtggacctgggggtcacctacataccttgggagaaggtgaagctggatgac
ctggatggctttgctgaaggaggaatcattgaccaggagaccgttaatgatgagtgggaa
gcagccaagaattctgagccagccaaggaagttacaagtcagccaggaagcgctgagact
acagcagcatctaacacccagactgaaacctacgctcaacaggtcaccatgatgcctgta
cagctgccagtggcccaggctgttcccagtgcagtaggtttggtgcctccttccttccct
gtcaccatgggcatacccccaccaggctacgggccgccaccgcccttcataagggctggc
ttcaatacctcacagcctccaccaggttttatgcaggcagcacagacagcaggcatggcc
tcggcaactacttctctcgtgcagtcttcagtggcaaccagccaagaagctgtcaaggaa
tcaccattcagtgctatgatacccccgaccagcactatccctggtagcttcatggcctca
gccatccctggagccggtgtgttcaacccagtgggagtccaaactcagcatgccaccaat
gagaaaacagcacagtctgcagagggtatggatgctgctgcagagcttacactgcaaggc
atgcagaatgcagtccgcagtgggatgggtctccttggcatgcaccccacagcttccctc
acccacccgctgcatcagtctggtctggctggacagagaatgcccggcctgctgcctctg
gatgtgcgacctaacctcctccaacctggcgtagccgcccgcttcccactcctcatgcag
cagggccccgtccagcaggctgctggcctcctcgacagtgccctccaggctcatgcccgt
gccagggctcccttctctcagctggaccccttcaacagggcccccaaccttaccaatgaa
aatgtatccaagacggaagatgagtcttcttctggggctgatgagggcaaagaccaggac
taccgcttcccgccaatggaaaagcagagcacaggcctgctgaggacccctccgccagag
cacagggagccccttggaggtggtggtggagcaggaggtggtgtaggaggcaggcctccc
ttgctccagaccccagggactcagccagccagaactagcctagtgggacgcctgcaggct
cttgcaggcttcactcctgataatcgctggaaccagaccagaggggactttgatgagcga
gatggaatgcgaggaggcctacaggccccaggtggtccaaaaggcttccaggaggagcgc
cccacaactgggcagaacttccccagccgctttgacagccgtcctgggacagcaggagga
gcaggaggagcagctggagttccgggaaatgctggagctgttggggggccacaggcctgg
aaccgtagtggtggtgccacagcgccttttgacagtgaactaaatcaagaccttgatgac
cgaagacgctcgtgggacaggcaaagagacagagatgaaagagattttgacttcaggagg
gagatgaatggtaaccgccacagccgagagagagagcgggagagggagagagacagggag
cgaggccgagaccgcaccagagagcctgaacgcgaaagagaccgcgacaaagagagagac
cgcgagagggaacgtgaacgtgggagctggacacctcttctccctctacctacacctctg
cttccaactccacctcttaatcccaacctgtccctgaaccaaggcaaactgcttgcgcca
ctcaaatttaacccccagatacagccacggttccagtccccactgcctcaagcacaggcc
aaaccgtctctcttgggtctgaatcagccgctgcctcaggttcagattaagtctccacct
tcatcacagagccaagcagctgtgcccgagccccagtcagaaaccccagctccgtctgag
acacctcaggcacagtcaccaccctcagcccaatcacctgacccatcatctgacaacaag
ggtcagagccagttgactgaggctcccaccgaggccgagtcatcaccacaaaccccttct
caaacagaatcgccattccagctcatggcccagtccccctccaaaaccacttcttctcca
gacagtgagaccccaagccaggcctcaccgctggttgaggcctcatcccaggactcacct
gtggccttcacacaagctgccagcccccctgaagagacgactcactctctggaggagcag
gaaagtccacagaaggatgaggagtcgtcacaagagagtgcctcctcaccccaaccccag
tggggcaatgtacctgggatggacaataacactgtggctgaacccacacctgaggcctct
cctgagccctctcctgagcccgctcaagaaccctcctccaattctgtgctccctgaaagt
gaaccagagcagcagcaggagcagcttgactctcctaaggacgtagacaatgaacagagt
gagcccatggaggaagctgcgagtcagccagtggtagacactgtcacagacactgagggg
acataa
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