Siniperca chuatsi (mandarin fish): 122862865
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Entry
122862865 CDS
T08948
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122862865 (pdzrn3b)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122862865 (pdzrn3b)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
122862865 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Sina_ZnF
Prok-RING_4
zf-TRAF
PDZ_Tricorn
U-box
zf-rbx1
zf-RING_6
IBR_1
TRAF2_zf
TRAF3_RING
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
122862865
NCBI-ProteinID:
XP_044024611
LinkDB
All DBs
Position
LG2:complement(27999910..28096988)
Genome browser
AA seq
1050 aa
AA seq
DB search
MGFELDRFKGTVDPDFKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
AKELNHVLPLKNLILKLEIKCDNHARGCDAVVKLQHLAEHAEMCDYSPAKCRNKGCNEVL
NLRDMDAHMRETCDYRPVGICESGCGLMLTHKEQKLNSHCCLIALKAHNSALHCKIVSLD
REFKKQTIKANKREKSLLAQLSAVHSELQMTALKYQKKFTEYSERIDSLTRTVAFSCKEG
ETKSVTVVLLREGGSLGFNIIGGKPCADDNDSTSNEGIFVSKIVDKGPADKEGGLQIHDR
IIEVNGKDLSKATHDQAVEAFRTAKEPIMVQVLRRAPHPKLVSPASDSQVSDISTQTDIT
LQHIMALTKLPPSLPPMTELEEYLLPEEHPPGHAYFDPNDFLEGIQQDIEREELEYEEVD
LYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAKDGRIREGDKIIQINGVEIQNR
EDAVALLTSEGNQNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENLGDDQTTASNTLG
SCRKLTYSQDTLGSADLPFSSESFISADYADTDFLGIPADECERFRELLELKCQMRNSGA
QALYYQGGGAGGQDQEGVDKELELLNEELRTIELECLNIVRAHKMQLLREQCRESWMLHN
SGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRGA
ENQGPAGASGSTSSIGRMLKPLLSPVQEACGPSRSRGSSKDPDGTLQVESKERKLGESSK
SGRSFSQPHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDPITPSDLE
PKMEWKVKIRSDGTRYITKRPVRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKE
ERKQHAVRAKEQRQRREFMKQSRADCLKELAGPEDKKEPNIIELSHKKMMKKRNKKIFDN
WMTIQELLTHGTKSPDGTRVYNSLLSVTTV
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagctggaccgcttcaaggggaccgtggacccggatttcaaatgcaacttg
tgcaacaaagtcttggaggacccgctgacgactccgtgcggtcacgtcttctgctccggc
tgcgtgctgccctgggtcgtccagcagagcagctgccccgtcaaatgtcagcggatctcc
gccaaagagctgaaccacgtcctgcctcttaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccacgcgaggggctgcgatgcggtggtgaagctgcagcatctggccgagcat
gccgagatgtgcgactactccccggcgaagtgcaggaataaaggatgcaacgaggtgctt
aacctgagggacatggatgctcatatgcgggagacgtgcgactacagaccggtggggata
tgcgagagcggctgcggattgatgctcacccataaagagcagaaattaaacagccactgc
tgcctgatcgctctgaaggcgcacaacagcgcgctgcactgcaaaattgtcagcctggat
agagagttcaagaagcagactattaaagccaacaagagggagaagtcactcctggcacaa
ctttccgccgtgcacagcgagctgcagatgacagctctgaaatatcagaagaaattcacc
gagtatagcgagaggatcgactccctcaccaggaccgtggctttctcctgcaaggaaggc
gagactaaaagcgtgacggttgtccttcttcgtgagggcggatctcttggttttaacatc
ataggaggaaagccatgcgcggacgacaatgacagcacttcgaatgaagggatctttgta
tccaagatcgtcgataaaggtccagcggacaaggaaggaggccttcaaatccacgacaga
ataatagaggtcaatggcaaggacctctccaaggccacccacgaccaggcggtggaggcc
ttccgcaccgccaaggagcccatcatggtccaggttctgcgccgagccccgcatcccaaa
ctggtcagcccggcttctgactcccaggtctcagacatcagcacccagaccgacatcacc
ctccagcacatcatggcccttacaaagctgcctccttctttaccccccatgacggagctg
gaggagtatctgcttccagaggagcatcctccaggacatgcatactttgaccccaatgac
ttcctggagggcatacagcaggacatagagcgtgaggagctggaatatgaggaagtggat
ttgtaccgagccaatatccaagacaagctcggcctgacgatctgttacaggactgatgat
gaggatgaggctgggatctacattagtgagattgatccaaacagcattgctgcaaaggat
ggcagaattagagaaggggacaaaatcattcagatcaatggtgttgagatccagaatcgg
gaggatgctgtagcgctgctgaccagtgaggggaaccagaatatctctctgctggtggcc
agaccagagatccagctggacgagggctggatggatgatgacaggaacgacttcctggat
gacctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgccagc
atgctgcagcagaagaagcatgaggaggacggaggcaccacagacacagccacactgctg
tccaaccaccatgagaaggacagcggggtcggtcgcacagatgagagtacgcgaaacgac
gagagctcggagcaggagaacctcggtgacgaccagaccacggcctccaacactctgggc
agctgcagaaagctgacctacagccaggacaccctcggcagcgccgacctgcccttcagc
agcgagtcattcatctctgcagactacgctgacactgactttctgggcatcccggctgat
gagtgtgagcgcttcagagaactcctggagctgaagtgccagatgaggaacagcggagcc
caggctctatactaccagggtggtggggcaggaggtcaggaccaagagggtgtagacaaa
gagctggagctgcttaacgaggagctgcgcaccatcgagctggagtgcctgaatatcgtc
cgtgctcacaagatgcagctgctgagggagcagtgccgtgagtcctggatgctccacaac
agtggcttccgcaactacaataccagcatcgatgcacgccgccatgagctctcagacatc
acagagctgccagagaaatcagacaaagacagctccagtgcctacaacactggtgagagc
tgccgcagcacccctctcacgttggagctgtcgccagacaactcgctccgtcgaggagca
gagaatcagggtccggctggggcgtccggctccaccagctctattggcaggatgctcaaa
ccactcctgtccccagtccaggaagcctgtggccccagccggagcagaggctcctccaag
gatccagacggaaccctgcaggtggagagcaaggagaggaagctgggcgagtccagtaag
tccgggcggagcttttcccagccacattcaccttacaagcatgcccacatccccgcccac
gcccagcactaccagagctacatgcagctgatccagcagaaatcagccgtggagtacgcc
cagagccagatgagtctggtcagcatgtgccgggaccccatcacccccagtgacctggag
ccgaagatggagtggaaggtgaagatccgcagcgacggcacacgctacattaccaagcgg
cctgtccgggacaagctgctgagggagcgtgccctgcgcattcacgaggagcgcagcggt
atgaccacagatgacgacgccataagtgagctgaagatgggccgctactggagcaaggag
gagaggaagcagcacgcagttcgcgccaaagagcagaggcagcgccgagagttcatgaag
cagagccgagccgattgtctgaaggagctggctggcccagaggacaaaaaggagcccaac
atcatcgaactcagccacaaaaagatgatgaaaaagaggaataagaaaatatttgacaac
tggatgaccatccaggaactgctgacccacggtaccaagtcaccagacggcacaagggtt
tacaactcactcctgtctgtgaccacagtctaa
DBGET
integrated database retrieval system
