Siniperca chuatsi (mandarin fish): 122863248
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Entry
122863248 CDS
T08948
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122863248 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122863248 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122863248 (col2a1b)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122863248 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122863248
NCBI-ProteinID:
XP_044025494
LinkDB
All DBs
Position
LG2:complement(13116701..13168450)
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AA seq
1491 aa
AA seq
DB search
MFSFMDSRTVLLLVATQVCLLAVVRCQEEDDQEDVLSCVQDGQRYSDKDVWKPEPCRICV
CDTGTVLCDEIVCEELKDCPKPEIPFGECCPICAADQSPPIGAPGAKGQKGEPGDITDVV
GPRGPSGPMGPPGEQGPRGARGDKGEKGSPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGSPGPQGFQGNPGEAGEPGQS
GPMGPRGPPGPPGKPGDDGEAGKPGKSGERGPAGPQGARGFPGTPGLPGIKGHRGYPGLD
GSKGETGAVGSKGEAGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPP
GPVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIP
GSKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPV
GLQGAPGPQGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPS
GASGPKGATGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGAR
GQPGVMGFPGPKGATGEGGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPAGPAGERGEQ
GQPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAVGATGPRGERGFPGERGAAGSQGLQ
GPRGLPGTPGTDGPKGAIGPAGGSGAQGPPGLQGMPGERGAAGIPGPKGDRGDLGEKGPE
GASGKDGARGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGAPGDRGETGPPGPAGFA
GPPGADGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVSGPKGARGAQGPPGAT
GFPGAAGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEK
GDAGEDGPPGPLGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDR
GPPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGATGAP
GPVGPTGKQGDRGESGAQGPSGPPGPAGARGMPGPQGPRGDKGESGEAGERGQKGHRGFT
GLQGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPAGKDGGNGLPGPIGPPGPRGRSGET
GPSGPPGNPGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGNLRQHDAEVD
ATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTVDAIKVFCN
METGESCVLPKPSSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDTLAPNTAAIQMT
FLRLLSTEASQNLTYHCKNSIAYMDASAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMED
GCTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGADQEFGVEVGAVCFL
NT seq
4476 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtctgtcta
ttagccgttgtgagatgtcaggaggaggacgaccaggaggatgttcttagctgtgtacaa
gatggacagcgctatagcgacaaggatgtatggaaaccagagccttgtcgcatctgtgtg
tgtgacactggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgcccc
aaacctgaaatcccattcggagagtgttgccccatctgcgcagctgaccagtctccaccc
attggagcacctggagctaagggtcagaaaggtgaacctggagacattaccgatgttgta
ggaccaagaggaccaagtggcccaatgggcccaccaggagagcaaggaccccgcggagcg
agaggagataagggagagaagggaagccctggtccccgcggcagagatggtgagcctggc
atccccggaaaccccggcccccctggacctccaggacctaatggaccccctggccttggt
ggaaactttgctgctcagatggctggtggttttgacgagaaggctggcggagcgcagatg
ggtgtgatgcaaggaccaatgggccctatgggtcccagaggaccacctggccctaccgga
tcacctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacaatct
ggccccatgggtccccgtggcccccctggacctcctggaaaacctggagatgatggtgag
gctggcaaacctggcaaatcaggtgagcgtggacctgctggacctcagggagctcgtgga
ttcccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgat
ggttcaaagggagagactggagctgttgggtctaagggtgaggctggtgctcccggagag
aatggtgctcctggaccgatgggacctcgcggtttgcctggtgagagaggccgtcctgga
cccagtggagctgctggagcacgtggaaatgatggcttgcccggtcctgctggcccccca
ggccctgtcggtccttctggagctccaggcttccctggctctcctggttcaaagggagaa
gctggtcctactggtgctcgtggacctgagggtgctcaggggccccgtggagagtctggc
actcccggatcacccggaccttctggtgcttctggaaaccctggtactgatggtatccct
ggatccaaaggatcagctggtgctcctggtatcgctggtgctcctggtttccctggacct
cgtgggcctcccgggcctcagggagcaactggacctctcgggcccaaaggaacatctgga
gatcccggtattccagggttcaagggagaggctggacccaaaggagaaattggaccagtt
ggacttcaaggagctcctggcccacaaggagaagagggcaaaagaggacccaggggtgag
cctggtgctgctggaccactcggacctcctggagagagaggagcccccggtaaccgtggt
ttccctggtcaagatggtctggctggtcccaagggagcccctggtgagcgtggaccctct
ggtgccagtggtcccaagggtgccaccggtgaccctggccgtcccggagagtctggtctg
cctggtgccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttgga
ccttctggagctcctggtgaggatggtcgcccaggaccccccggcccacagggagcccgt
ggacagcctggtgtcatgggattccccggacccaagggagcaactggcgagggtggcaag
tctggtgagaaaggactgggtggagctcctggtctgagaggtctgcccggcaaagatgga
gaaactggccctgctggaccccctggccctgccggccctgctggagaaagaggagagcaa
ggacagcccggtccctcaggtttccagggtctacctggacctcctggcccccctggtgag
ggaggcaagcctggagaccagggagttcctggagaggctggagctgttggtgctactgga
cccagaggagagcgtggtttccctggagagagaggagctgccggctctcagggtctgcag
ggacctcgaggtctgcctggaactcctggaactgacggacccaagggagccattggacct
gctggtggctccggagctcagggaccccccggcctgcagggtatgcctggagagagagga
gctgctggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaa
ggtgcttctggcaaagacggtgctagaggtctcactggtcccattggtcctcctggtcct
ggtggtcccaacggcgagaagggtgaatctggtcctgctggtccttctggagcgcctggt
acccgcggtgctcctggtgacaggggtgagactggacctcctgggcctgctggatttgct
ggaccccctggtgctgacggtcagcctgggatcaagggagagcagggagaatctggacag
aagggtgacgctggtgcccctggaccccaaggaccctctggtgcccctggacctgcaggt
cctacaggtgtttctggacctaaaggtgcacgtggtgctcagggacctcctggtgccact
ggtttccctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacct
gctggtcctgccggccctcctggtaaagatggacccaagggtgtgaggggagatggtgga
cccccaggcagacagggtgatgctggactccgtggtcctgctggggctcctggagagaag
ggagatgctggagaagacggtccccctggtcccctgggtccttcaggtcctcaaggtttg
gctggtcagcgtggtatcgtcggtctgcctggacagcgtggtgagagaggtttccctggt
ctacctggaccttctggtgagcccggaaagcagggagctcctggtggcagcggagaccgc
ggaccccctggacctgttggaccacctggactcactggacctgcaggagagcctggcaga
gagggcaaccctggatctgatggacctcctggtagagatggtgctactggaatcaagggt
gatcgtggtaacactggtcctgctggtgctcctggcgctccaggcgctactggtgctccc
ggcccagttggtcccactggcaaacagggagaccgaggagagtctggtgcacagggacct
tctggacctccaggacctgctggagccagaggaatgcctggacctcaaggaccccgcggt
gacaagggtgagagtggagaggccggtgagagaggacagaagggacacagaggcttcact
ggtctgcagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacct
gctggaccttctggacaaagaggaccacctggacccgttggccctgctggaaaggatggt
ggaaacggtctgccaggacccatcggaccccccggacctcgtggtcgcagtggagagacc
ggtccctctggtccccccggaaaccccggaccccccggtcctcctggtccccctggccct
ggcattgacatgtccgccttcgctggtctgggtcagactgaaaagtcccctgatcctctc
aggtacatgagggccgaccaggcttccggaaacctccgtcagcatgatgctgaggtcgac
gccacgctcaaatctctcaacaaccagattgagaacatccgcagccccgagggatctaag
aagaacccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcgga
gagtactggattgatcccaatcagggctgcaccgtcgacgcaatcaaggtcttctgcaac
atggagacaggagagtcctgcgtcctccccaagccttccagcatccctcgcaagaactgg
tggtccagcaagagcaaggaccgcaaacacgtctggtttggagagacaatgaatggagga
ttccacttcagctatggcgatgacaccctggcacccaacactgctgccattcagatgact
ttcctgaggttgctgtccaccgaggcttctcaaaacctcacctaccactgtaagaacagc
atagcctacatggacgcctcagcgggcaacctgaagaaggccgtgctgctgcagggctcc
aacgacgtggaaatcagagccgagggcaacagccgcttcacttacagcgtgatggaggac
ggctgcacgaaacacacgggacagtggggcaagacagtgatcgaatacagatcgcagaag
acttctcgtctgcccattgtggacattgcccccatggatattggtggagcagaccaggag
ttcggagtcgaagttggggcagtctgcttcttgtaa
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integrated database retrieval system
