Siniperca chuatsi (mandarin fish): 122863373
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Entry
122863373 CDS
T08948
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122863373
03016 Transfer RNA biogenesis [BR:
schu03016
]
122863373
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122863373
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122863373
Transfer RNA biogenesis [BR:
schu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122863373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
DUF4882
Motif
Other DBs
NCBI-GeneID:
122863373
NCBI-ProteinID:
XP_044025738
LinkDB
All DBs
Position
LG16:complement(13093307..13100575)
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AA seq
740 aa
AA seq
DB search
MAAFTEMGVMPEIAQAAEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKTGRASIKTGGAIFNSWQMNPYDRSAAFAIGPDGMCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRVGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDQDKGQISFSKNGNDLGVAFEIPQHVKNQPFFASCVLKNAELKF
NFGGEDFKHAPKSGFVALDQAPEGHTVKSSQTGSAKVSQVKASSNAPKALIIEPSKELAE
QTLNNVKQFSKFVENPKLRELLVIGGVAAKEQLAALEQGIDIVVGTPGRLDDLISTGKLS
LSQVRFLVLDECDGLLSAGYTDFINRIHTQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPETVHHVVVPVNPKSDRLWERLGKNHIRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYAVRAIKEHKMDQAIVFCRTKIDCDNMEQYFIQQGGGPDSKGHQL
SCVCLHGDRKPNERKNNLERFKRKEVRLLVCTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLS
EIEEHLKCTITQCEPDIKVPVDDFDGKVTYGQRRALGGGNYKGHVDILAPTVQELASLES
EAQTSFLHLGYMPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtttactgaaatgggggttatgcctgaaatcgcacaggctgcggaggagatg
gactggctgctacccactgacatccaagcagagtctattccccttattcttggtggcgga
gatgtacttatggcagcagaaactggtagcggcaaaacaggtgccttcagtatcccagtg
atccagattgtgtatgagaccctgaaggatcagcaggagggcaagactggcagagcctcc
atcaagactggaggagctattttcaacagttggcagatgaatccttatgaccgcagtgca
gcctttgcaattggtccagatggaatgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctctacaaaaggtgtcaccaaagggaagtactactatgaggtgacctgccat
gaccagggcctgtgtcgcgttggttggtccaccagccaggcagccttggacttgggaact
gataagtatggttttggttttggcgggactggaaagaaatccaacaacaagcagtttgac
agctatggagaggagtttaccatgcatgacactattgggtgctacttggatcaagacaag
ggccaaatttccttctctaaaaatggtaatgacctgggtgtggcttttgagatccctcaa
catgtaaagaatcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaagactttaaacatgcccctaagagtgggtttgttgccctggaccag
gccccagagggtcacacagtcaaatcttcgcagacaggcagtgccaaagtgagtcaggtg
aaagcatcatccaacgcacccaaagctctgatcatcgaaccatctaaggaactggctgaa
caaaccctgaacaatgtcaagcaatttagcaaatttgtggaaaaccccaaactcagggag
ctactggtgattggtggtgtggctgccaaagagcagctggctgctctggaacaggggatt
gacattgtggtgggaacacctggcagactggacgacctcatatccactgggaaactcagt
ctgtcccaagtccgctttctagtcctggatgagtgtgatggtcttctgtctgcaggctat
acagactttatcaacaggatccatacccaaatccctcaggtcacttctgacggcaagaga
ctgcaggtgattgtttgttcagccacactgcattcttttgacgtaaagaagttgtcagag
cgtatcatgcactttcccacttgggtggacctgaagggggaggactctgttcctgagact
gtccaccatgttgtagtgcctgtcaatcctaagagcgaccgcctctgggagcgtctgggc
aagaaccacatccggactgatgaagtccatgccaaagataacaccagaccaggagccaat
tctgcagaaatgtggtcagaagctatcaaggtgctgaagggcgagtacgcagtgagggcc
atcaaagagcacaagatggaccaggccatcgtcttctgtcgcaccaagattgactgtgac
aacatggaacagtacttcattcaacaaggaggaggtccagatagtaaaggccaccagctt
tcctgtgtttgtctccatggtgatcggaagcccaatgagcggaaaaataacttggagcgc
ttcaagagaaaagaagtgaggctcttggtctgcacagacgtagctgccagaggaattgac
atccacggagttccttatgtgattaacgtcaccctgccagatgagaagcagaactatgtc
caccgcatcggcagagttggaagagctgagagaatgggactggccatctccttggttgct
atggagaaggagaaggtgtggtaccacgtttgcccgaaccgaggcagaggctgctacaac
acccgactgaaggaggacggaggttgcaccatctggtacaatgagaaagagctcctgtca
gaaattgaggagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtacct
gtggatgactttgatggaaaggttacctatggtcagcgcagggcattgggaggcggtaac
tacaagggtcacgtggatattctggccccgacagtccaggagctggctagcctcgagagt
gaagcccaaacttccttcctgcacctgggatacatgccaaaccaacttttcaaagccttc
tga
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