Siniperca chuatsi (mandarin fish): 122863706
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Entry
122863706 CDS
T08948
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04140
Autophagy - animal
schu04148
Efferocytosis
schu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122863706 (vps18)
04148 Efferocytosis
122863706 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122863706 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122863706 (vps18)
Membrane trafficking [BR:
schu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122863706 (vps18)
Hops complex
122863706 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-C3HC4_2
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-RING_2
zf-RING_Vps41
zf-RING_UBOX
DUF1664
DUF5600
zf-ANAPC11
zf-rbx1
Apolipoprotein
zf-C3H2C3
DUF4446
DUF2175
Sec8_N
zf-RING_5
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
122863706
NCBI-ProteinID:
XP_044026378
LinkDB
All DBs
Position
LG16:complement(11747431..11753282)
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AA seq
982 aa
AA seq
DB search
MASILDEYEDSQNTRQSAQQHSRLSTANIGITHSGFVNVRLEEEKPIFNKQRIDFTPPEK
INHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDESKVHRLFLDPTGSHLLISL
STSECLYLNRNTQKVRSLSRWRGHLLESVGWNKLLGNETNTGPILVGTSQGIIFEAEISA
TEGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERGLENKYFIIATTRKRLFQFVGKVA
EGSEQQGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQ
LDYVRPDSLLSDVQVWEYTQEIDLCVNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYE
DVFPDKFGTLKKMIKDPVGGLVWIYTERAVFRYHVQREARDVWQMYMSMNKFDLAKEYCR
DRPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEAKQEEALKEFLLKK
LNNLKQSERTQITLLVTWLAELYLNRLGQLESDGNSIIFQETRDEFRNFLSNSKHKECLY
NNRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYSAALDVLSKHCDQKLFYK
FSPVLMQHIPKKVVAAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELT
VTEEAIHNYLLSLYAKYKPDSLLWYLEQAGTHASEIHYDLKYALRLCAEHGYLRACVLVY
RIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCL
SSCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDI
QEMRNKYGVVDSQEKCAACDFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLTAYKQSRLEE
LQKKLAATTQSSKSRHRPVTKDEGDTSSLGKGNTGTSREQIKSDIDDIIASECVYCGDLM
IKSIDKPFIDQQKFEEEKSSWL
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattcttgatgagtacgaggactcgcaaaacaccaggcaaagtgcgcagcag
cacagccgcttgtcaactgccaacatcgggataacccattcaggctttgtgaatgtgaga
cttgaggaagagaagccgatattcaacaagcagaggatcgattttacaccgcctgagaag
attaaccatcttgcagtctgcaacaatcagctatgcatgagtctgggaaaggacaccctg
ctgaggattgacttggccaagccagatcaacctaatcagattgaattaggaaggaaagat
gaaagtaaagtgcacagactgttcctggaccccactggctcccatctgctgatcagcctg
agcaccagcgagtgtctgtacctcaacaggaacacgcagaaggtgcgcagtctgtcccgc
tggagaggccacctccttgagagcgtaggctggaacaagctgctgggcaatgagaccaac
acaggacccatcctggttggcacaagtcaaggcatcatatttgaggctgagatctctgca
actgagggcagcctgttcaacaccaatccagatcaatacttcagacaggtccactccctg
gaggaggatgggaagcctgcaccagtctgctgcctggaggtggagcggggcctggagaac
aagtacttcatcatcgccaccacccgcaaacgcctgttccagtttgtgggtaaggtggcc
gaggggtcagagcagcaaggcttcagctccatcttcagccagaatcaggacctactgccc
agtttccaggagttcccagccaacatggggtacagcgagatcaccttctacacctcgaag
cttcgcacctcccctaaggcgttcgcctggatgatgggtaatggagttctttatggtcag
ctggactatgtcaggcctgattccctgctgagtgatgtgcaggtatgggagtacacccag
gaaattgacctttgtgtcaacaagcccatctccattgtgttgacacagttccacttcctg
ctgctgctccatgaccgagttaaagccatctgcactctgaatggacaggtggtatatgag
gatgtgttcccagataagtttggcacccttaagaagatgatcaaggacccagttggtggg
ttggtgtggatctacactgagcgggcagttttccggtaccacgtccagcgcgaggccagg
gacgtctggcagatgtacatgagcatgaataaatttgatctggccaaggagtactgccgt
gaccggcctgagtgcatggacatggtgctggccaaagaggctgagcactgcttccagaac
aagcgttaccttgagagtgccaagtgctatgcgctgacacagaactactttgaagagata
gcactcaagttcatcgaagccaaacaagaggaagccctgaaggagttcttactgaagaaa
ctaaataatttgaaacagagcgagagaacgcagatcaccttactggtcacctggctagcc
gagctctacctgaaccggcttggccagctggagagtgatggaaacagtatcatctttcag
gagacccgtgatgagtttcgcaacttcctcagcaactccaagcacaaggagtgcctgtac
aacaaccgcagcaccatctacgacctgttggccagccacggcaatgtggatgacatggtt
tacttctcagttgtcatgcaagactatgagagagtgatatctcactactgccaacatgac
gactacagtgctgctctggatgtgctctcgaagcactgtgatcagaagcttttttacaag
ttctcccctgtcctcatgcagcatattcccaaaaaagtggtagctgcgtggattcagatg
ggcaagcggctggacccaaagaagctcatcccagctctgatgaactacagccagatgggc
agcacccagcagatcagtgaaaccatccgctacatggagttctgtgtgtacgagctgacc
gtgaccgaggaggccatccataactacctgctgtcgctctatgccaagtataagccggac
tctctgctgtggtatctggagcaggcaggtacacacgcctcagagatccactatgacttg
aagtacgccctcagactgtgtgcagaacatggctacctccgggcctgtgtcctggtttac
aggattatggaactttatgaggaggcagtggatcttgctttacaagtggatgtagacttg
gccaagtcatgtgcagatctgcctgaagatgacgaggagctgaggaaaaagctttggctg
aagatcgcccggcatgtggtgcaggaggagaaagacgtgaagaaagccatgaactgtctg
tccagctgcaacctgctcaagattgaagacatcctgcccttcttcccagactttgtcacc
attgaccactttaaggaggccatctgcagctccctggaggagtacaaccagcacatcgag
gagctgaaacaggaaatggaggaggccacagagagtgctaaacgcatcagagaagacatc
caggaaatgaggaacaaatatggtgtagtggattctcaagaaaagtgtgctgcttgtgac
ttcccattgctcaacaggcccttctatctgttcctatgtggacacatgttccactatgac
tgcctgttccaggaagtgacccctcacctgacggcctataagcagagtcgtttggaggag
ctgcagaaaaagctggctgcaaccacgcaatcctccaagtcacgccaccgcccggttacc
aaggacgaaggagacacttccagcctgggaaagggtaatacgggcacaagccgtgagcag
ataaaatccgacatcgatgacattattgcgtctgaatgcgtgtactgtggcgacctgatg
atcaagtccatcgacaagcctttcattgatcaacagaaatttgaggaggagaaatccagc
tggctatga
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