Siniperca chuatsi (mandarin fish): 122863818
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Entry
122863818 CDS
T08948
Symbol
smarcc1b
Name
(RefSeq) LOW QUALITY PROTEIN: SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122863818 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122863818 (smarcc1b)
03036 Chromosome and associated proteins [BR:
schu03036
]
122863818 (smarcc1b)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122863818 (smarcc1b)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122863818 (smarcc1b)
PBAF complex
122863818 (smarcc1b)
GBAF(ncBAF) complex
122863818 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
122863818
NCBI-ProteinID:
XP_044026517
LinkDB
All DBs
Position
LG17:complement(16500442..16509595)
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AA seq
954 aa
AA seq
DB search
MSGGTNLGIPGTSQVSPGTSAHRKKDSSPSARFWESPDTLAQLEVVRQWIGKHYKKYVLV
DAPSCQALAAVTLQLLQFQEDAFGRQAASPALTKLPTQCFLDLRPGGGLCHILGTAYKFK
AEQGWRRFDLQNPSRTERNVEMFGTIERALIQNNCMSLPVVYLDPTLDQELASRLTDIIT
KHQGTLTVDRALASHHIYPVPAFTEEDEWMRPVMRKDNHVLVHWGMHPDSYDSWLSSSDV
EGEVEEPPHSEKLWRVHAGWVLNTDVFNEWMNEEDYCVDERNVPIILRQRIHLRDDQDSK
STPSKKRRRSPSPPSSEGRKKGKKGRRRGQQEEEPEEDLTKDMEDPTPVPNMEEVILPKI
VNLKKDSENTPVKGGTMADLDEQEDDFPGREDEEGRGEIPRLSEGEDNITEQTHHIIIPS
YTSWFNYNSIHSIEKRSLPEFFNGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRR
NLTGDVCAVMRVHAFLEQWGLINYQVDAESRPXPMGPPPTPHFNVLADTPSGLAPLQHKP
LQVSASQHMLFFPEKSRDKPSDCQNFGLRSDIYTKKHPKTKGASAGREWTEQETLLLLEA
LEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSQSENP
VMSTVAFLASVVDPRVASSAAKAALEEFSRVQEDSVDKISEMSNQPDKIELMDAEKIETN
STSHQVPVRVDGLKVELSGAKVEGERVKRENAENILAEERDGMGDDDESVGRREGDGDDG
RVMEQDLVEGSVATAAAAALASAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHF
EELETIMDREKEALEQQRQQLLSERQTFHTEQLKQAEMKVRQQREQQGQPGYSVQHSALP
PPSGQSMPTRMMPGGGNAQAMAPRHPGAPNGMYPSSQPDGIAPAQPGHQASGHS
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggaacaaacctcgggattcccgggacaagccaagtcagccccggcacatcc
gcacaccggaaaaaagatagcagtccgtccgctaggttctgggagagtccggatacttta
gcccagctggaggtggtgcgacagtggatcgggaagcactacaaaaagtatgtgctggtg
gatgctccatcgtgtcaggctctggctgcagtgaccctgcagcttctccagttccaagag
gatgcctttggcagacaagctgccagtcctgctctcaccaaactgcctacacagtgcttc
ctggacctgcgaccagggggtggactctgccacattcttggcactgcctacaagttcaag
gctgagcaaggctggcggcggtttgacttgcagaatccgtcaagaactgaaaggaatgtt
gagatgtttggtactattgaaagagcgctgatccagaacaactgtatgtcactgcctgtg
gtatatctggaccctacgctggatcaggagctggctagcagacttaccgatattatcacc
aaacaccagggtacactcactgtggaccgagcgctcgccagtcaccacatctaccccgta
cctgcttttacagaggaagatgaatggatgcgtcctgtcatgcggaaagacaaccatgtc
ttggtacactggggcatgcaccctgacagttatgacagctggctgtcctcaagtgatgtt
gaaggagaggttgaagagccaccacattcagaaaagctgtggcgggtccatgctggctgg
gttctgaacaccgatgttttcaacgagtggatgaacgaggaagactactgtgtggatgag
aggaatgtaccgatcattctccgccagcgtattcacctccgagacgaccaggactccaaa
tccaccccctccaaaaagagaagacgctccccctctcctccttcatctgaaggcaggaag
aaaggaaaaaaggggagaaggcgtgggcaacaggaggaagagccagaagaggacttgacc
aaagacatggaggaccctacccctgttcccaacatggaggaggttatactacctaagatt
gtcaacctgaagaaggacagtgagaatactcctgtcaaaggaggaaccatggctgacctg
gatgaacaggaggatgatttcccaggaagggaagatgaggagggaagaggggagatacct
cgcctgtcagaaggagaggacaacatcacagaacaaacccatcatatcataataccaagc
tacacatcttggttcaattacaacagcattcactcgatagagaaacgttcattgcctgaa
ttcttcaatggaaagaacaagtccaaatctccagaaatctatctggcgtaccgtaacttc
atgatcgacacataccggctcaacccccaagaatacctcagttcaacatcctgcaggcgc
aacctcactggagacgtctgtgcagtcatgagagttcatgcctttttggagcagtggggt
ttgattaactaccaggtggatgcagagagcagacccntccccatgggacccccacccacc
cctcatttcaacgttctggctgacacaccatctgggctggcccccttacaacacaaaccg
ctacaggtgtcagcctcacagcacatgttgtttttcccagaaaagagcagagacaagcct
tcagactgccagaactttggtctgcgcagcgacatctacaccaagaaacaccctaagact
aaaggagcgagtgcaggaagggaatggacagagcaagagacgctcttgctgttagaggcc
ttggaggtctacagagacgactggaacaaagtgtctgagcatgtgggctccagaacgcag
gacgagtgtatcctccacttccttcgcctgccaatagaagacccttacctagaagactcc
tcggcctccctcgggccactggcgtaccagcccgtgcctttcagccaatcagaaaaccct
gtcatgagcactgtggccttcctggcatccgtagtggacccacgggtggcatcatccgca
gctaaggccgctctggaggagttttcccgagtgcaggaggactcagtggataagatctct
gaaatgtccaaccagcctgacaaaatagaattgatggatgcagaaaaaattgagacaaac
tccacctcccatcaggtccctgtaagggtggatgggctgaaggtggaactcagtggggcc
aaagtggagggagaacgagtcaaaagagaaaatgctgaaaatatacttgcagaggagaga
gacggaatgggagatgacgacgagagcgtaggccggcgggagggagacggggatgacggg
agagtgatggagcaggatctggttgagggcagcgttgccacggcagcagcagctgctctg
gcctcagctgccacaaaggccaagcacttggcggcagtagaagagaggaagatcaagtcc
ctggtggctctgctggtggagacccagatgaagaagctggagatcaagctgaggcacttt
gaggagctggagaccatcatggaccgtgagaaggaggctctggagcagcagcggcagcag
ctcctgtcagagagacagacgttccacacggagcagctgaaacaggcagagatgaaggtt
cgccagcagagggagcagcaggggcagccgggatactcagtgcagcattcagccctgcct
cctccttcaggccagtccatgcccactcggatgatgcctggtggaggaaatgcccaggcg
atggccccccgacaccctggagctcccaatggcatgtacccgtcctcgcagcctgatggg
atagcaccagctcagccgggtcatcaagcatctggtcacagctga
DBGET
integrated database retrieval system
