Siniperca chuatsi (mandarin fish): 122864185
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Entry
122864185 CDS
T08948
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
schu00535
]
122864185
Proteoglycans [BR:
schu00535
]
Extracellular matrix (ECM) proteoglycans
Others
122864185
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_VIN3
Fn3_PBP1
Fn3_ROS1
VWA_3
T05H10_N
Motif
Other DBs
NCBI-GeneID:
122864185
NCBI-ProteinID:
XP_044027294
LinkDB
All DBs
Position
LG17:complement(2856673..3073452)
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AA seq
1870 aa
AA seq
DB search
MQFSVRLSLCLLGLVLVSLFPQPAQGQVSSPRRFRAKILSPTKLHVSWKEPKGEFESYKV
IYTTRPGGEQKEVQVLKQEAKLLIQDFDPSKEYNFKIIAVSGGQQSKPLQAKHEAQRSGV
EVVQSQRTQDSGVTDENNEISEAEEGFMCKTPAIADIVILVDGSWSIGRINFRLVRTFLE
NLVKAFTVEFDKTRIGLAQYSGDPRIEWHLNAHTTKEAVIDAVKNLPYKGGNTLTGLALT
FILENSFKPVSGSRPGVPKIGILVTDGKSQDDVIPPAQSLREAGIELFAIGVKNADENEL
KAIASPPEETHVYNVADFAMMSDIVEGLTKTICDRVEHLDKQLKGGGEPAPPPTSVAPPR
DLVTSEITARSFRVTWTHAPGQVEKYRVVYYPASGGQPEEKVVKGTENSVELNYLNSLTE
YQVAVFAIYRSSASEALRGSATTLALPMVNNLELFDITHSTMRVRWKTAAGASGYMILYA
PLTEGDPADEKEVKVADSVNEVELEGLTPATEYTVTVYAMYGEEASDPMTSQQTTLPLTP
TRNLRFSDVDHSSAQLTWDSASRKVKGYRVMYVKTNGVQTNEVDVGRVTTWLLRNLTSLT
EYTVGVFAIYDEGQAEAVTDSFTTKTVPDPLDLRSSDISTDSFRLSWQHPASDVVLYRLT
WTPTDGGDSEEVLVNGNINTYLLKGLSPSTEYEVLLAAIYSNEVESDEVILVESTVERTT
TIATTTTTTAAPRFGVRNMRIDEETTFSMRVAWQPVDSRNVRHYRLNYISAKGDRADETR
TVPTGQNSLVLQPLLSDTEYKVAITAVYPDGDGPTASRMGRTLPLSAPKNLRVSEEWYNR
FRISWDVPPSPTMGYRVVYQPVSAPGPALETFVGEDVNTMLIVNLLSGTEYSVKVIASYT
TGSSEALSGRAKTLYLGVTNLSVYQVRMTSLCAQWLTQRHASAYRVIIESLLNGQKQETK
LSGGANRHCFNNLKPNTQYKISVYAQLQDGTEGPAVTATEKTLPIPTPAPTKPPTTTPLP
TIPAAKEVCKAAKADLVFLVDGSWSIGDDNFLKIIRFLYSTSGALDRIGPDGTQVAIAQF
SDDARTEFKLNSYSDKERLLDAINRISYKGGNTKTGRAIQHVKENIFTTEGGVRRGIPNV
LVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSDRHVFFVDDLDA
FKKIEEKLVTFVCEAATATCPSVPMSGSTTPGFRMMELFGLVENRYSSVSGVSMVPGTFN
TFPSFHLHSDAFLAQPTRYIHPEGLPSDYTITLLFRLLPDTPEEPFALWEILNKSNEPLV
GVILDNGGKTLTFFNNDYKGEFQTVTFEGPEIKKLFYGSFHKLHIAISKTSAKVVIDCKM
VAEKTINAAGNITIDGLEVLGRMVRSRGNKDNSAPFQLQIFDIVCSTSWANRDKCCELPG
LRKEADCPAMPKACTCTQDSKGPSGPAGPPGGPGIRGARGDRGEPGPVGPTGPVGDTGVP
GPQGPQGPQGPSGRSIIGPPGAPGERGQKGDAGQQGAQGIPGRAGAPGREGPAGPRGLPG
KDGPPGRQGPSGTIGTPGAPGAPGNTGPSGKQGELGPPGSPGSKGEKGERGDLQSTASVQ
AIARQVCEQLIQSHMERYNSILNHVPSPPVSIRTVPGPPGEPGRQGSPGAQGEQGPPGRP
GFPGQNGQNGQPGERGQPGEKGEKGSPGVGVQGPRGPAGPPGPQGQGRPGSQGPSGRPGN
PGNPGRPGVPGPVGSAGPPGYCDQNACVGYNVGEGEDVTDGGAIPAVQLPPNVFQNYGEV
EEDDPYRYYQPNYPAPRPVEPDDPALALDDIELRSPGIHRSTRSLEGEEKRVGPKRRLKR
GAKTLPGLIK
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atgcagttctcagtcagactgagcctctgcctgctgggcctcgttctcgtctctttgttc
cctcagccggcgcagggccaagtttcatctccgcggagatttcgtgccaaaatcctgagc
cccaccaagctgcatgtgtcatggaaagaaccaaaaggagagtttgaaagctacaaggtc
atttacaccactcggccaggtggagagcagaaggaggttcaggtactgaagcaggaagca
aagttactcatccaggactttgacccttctaaagaatacaattttaagataattgcagtc
agtggaggacagcagagcaaaccacttcaggccaaacatgaagctcagcgttcaggcgtc
gaggtggttcagtcccagaggacacaagacagcggtgtcactgatgagaacaacgagatc
tcagaagctgaagaggggtttatgtgtaagaccccggccatagccgacattgttattctg
gtggatggctcctggagtatcggacgcatcaacttcaggctggtcaggacgttcctggaa
aacctcgtcaaggccttcactgtggagtttgacaaaaccaggattggcctggctcagtac
agcggagaccccagaattgagtggcatcttaacgctcacaccaccaaggaggctgtgatc
gatgctgtgaagaacctgccatataaaggaggaaacacactgacaggtctggctctgacc
ttcatcctggagaacagcttcaaaccggtgtctggatccaggcccggcgttcccaagata
ggaatcctcgtcactgacgggaagtcacaggatgatgtgataccccccgcacagagcctg
agggaagctgggatagaactgtttgccattggtgtgaaaaacgctgatgagaacgagctg
aaggccatcgcctctcctcctgaggaaactcacgtctacaatgtggcggacttcgccatg
atgagcgacatcgtggaaggcctcaccaagaccatctgcgaccgcgtggagcacctcgac
aagcagctcaaagggggaggagaacctgcacccccgcccacctccgtggctccgccccgc
gacctggtgacatcggagatcacggctcgcagtttccgggtgacatggacccacgcaccg
ggccaggtggagaaataccgcgtggtctactacccagccagcggaggacagccagaagaa
aaagtggtcaaggggacagagaacagtgtggagctgaactacctgaactctctgacggag
taccaggtggctgttttcgccatctaccgcagctctgccagcgaggccctgagaggaagt
gctaccacattggccctgcccatggtgaacaacctggagttgtttgatatcactcacagc
accatgagggttcgctggaagactgccgctggggcttctgggtatatgatcctgtatgcc
ccgctgactgagggagaccctgcagacgagaaggaggtgaaagtggcagactcggtgaat
gaggtagagctggagggattgactccggccacagagtacacggtaacagtttacgccatg
tacggagaggaggccagcgaccccatgaccagccagcagaccacattaccgctgactccg
acaaggaacctgcgtttctcagacgtggaccacagctccgcccagctcacatgggactcc
gcctctcggaaagtcaaaggctaccgtgtcatgtacgttaagaccaacggagtccagacc
aatgaggtggatgttggccgtgtgacaacctggttgctaagaaacctgacctccctgacg
gagtacacggttggtgtctttgccatctacgatgagggacaagctgaggccgtgactgac
agcttcacaacaaagaccgtcccagacccgctggatctgaggagcagtgacatctccaca
gacagcttcaggttgtcatggcaacacccggcctccgatgtggtgctgtaccgactcacc
tggacgcccaccgatggaggagacagcgaagaggttctggtgaacggaaacattaacacc
tacctgctgaaaggactcagcccctccacagagtacgaagtcctccttgctgcaatctac
agtaacgaggttgagagtgacgaggtgatcctcgtagagtccaccgttgaaagaacaacc
accatcgctacgacaaccaccaccacagcagctcctcgtttcggggtgaggaacatgagg
atcgatgaggaaaccacctttagtatgcgggtggcctggcagcctgtcgactcgaggaat
gtccgccattatcgactgaactacatcagcgccaagggagaccgagcagacgagacgagg
actgtgcccacaggtcagaacagcctggttctgcagcctctgctgtcagatacggagtac
aaagttgccatcactgctgtttaccctgacggagacggaccgacagcgtctcgaatggga
cgaacacttcctctttcagctcctaagaacctgcgggtatcagaggaatggtacaaccgc
ttcaggatcagctgggacgttccgccttcacccaccatgggctacagggtcgtctaccag
cctgtatctgcccctggaccagctctggagacctttgtgggagaggacgtgaacaccatg
ctgatcgtcaacctgctgagcgggacggagtacagtgtcaaggtcatcgcctcctacacc
actggatccagcgaggctctttcagggagggccaagaccctgtacctgggggtcactaac
ctgagcgtatatcaggtgaggatgaccagtctgtgcgcccagtggctgactcagcgccac
gccagcgcctacagagtgatcatcgagtcgctgctcaatggtcagaagcaggagacgaag
ctgagtggaggagccaacagacactgtttcaacaacctgaagcccaacacgcagtataaa
atcagtgtgtacgctcagctgcaggacgggactgaagggcctgcagtcactgctactgag
aagacactacccatcccgaccccagcaccaaccaagccccccaccaccacaccgctgccc
acaatccccgctgcaaaagaagtctgtaaggcagccaaagcggacctggtcttcctggtt
gacggttcttggagtatcggtgatgacaacttcctgaagatcatccgcttcctgtacagc
acctctggagctctggaccggattggtcctgatggcacacaggtggccattgcccagttc
agtgacgacgcccggaccgagttcaaattgaactcgtacagcgacaaggagcgactgctg
gacgccatcaacaggatttcctacaagggaggaaacaccaagacaggtcgagccatccag
cacgtgaaggaaaacatcttcacgacggagggaggagtcaggaggggaatccccaatgtc
ctggtggtcctcaccgacggccgatctcaggatgacgtcaacaaggtttccaaggagatg
cagatggaagggtacattgtgtttgctatcggcttcgctgacgctgactacggggagctg
gtgagcatcgccagtaaacccagcgacagacacgtcttcttcgtggacgacttggacgcc
tttaaaaagatcgaagagaagctggtgacctttgtgtgtgaggctgccactgccacttgt
ccatctgtaccgatgagcggcagcacaacaccaggtttccgtatgatggagctgtttggg
ctggtggagaatcggtacagcagcgtctctggcgtttccatggtacctggcaccttcaat
accttccccagtttccacctgcacagtgatgcttttctggcacagccaaccaggtacatc
catcctgaagggctgccgtctgattacaccatcaccctgctgttcagactgctgcccgac
actccagaggagcccttcgccctctgggagatcctcaacaagagcaacgagccgctggtg
ggagtcatcctcgacaacgggggaaaaactctgacgttcttcaacaacgactacaaagga
gagttccagacggtgaccttcgaagggccagaaatcaagaaactcttctacggcagcttc
cataagcttcacattgcaatcagcaagacgagcgccaaagtggtgatcgactgcaagatg
gtggccgagaaaaccatcaacgcagcaggaaacatcaccatagacggactggaagttctg
ggcaggatggtccgctccagagggaacaaggacaactctgccccgttccagctccagatc
tttgacattgtctgcagcacttcgtgggccaacagagacaagtgctgcgaacttcctggc
ctgaggaaggaggcagactgcccagccatgcccaaagcctgcacctgcacccaggacagc
aaaggcccctccggccctgctggaccaccaggaggcccaggaatcagaggagccagaggt
gatcgcggagagccaggcccagtggggccgactggtccagtaggtgatacaggtgtacca
ggacctcagggaccccaaggaccacagggacccagtggacgctccatcatagggccccca
ggtgctccgggagagagaggacagaaaggtgatgctggacaacaaggagcacagggaatt
cctggcagagctggagctccgggcagagagggacctgcaggacccagaggcctgccaggc
aaagacggcccgccaggcagacagggtccctcgggaactatcgggactccaggagcccca
ggggccccaggtaacacaggcccttccggaaaacagggagagctgggaccaccgggttct
cctggaagcaaaggggagaaaggtgaacggggtgacctccagtcgacagcatcagttcag
gccatcgccaggcaggtctgtgagcagctgattcagagccacatggaacgctacaactcc
atcctgaaccacgtacccagtccaccagtgtccatccgcactgtgccaggacccccagga
gagcctggcagacagggatctccaggggcccagggagaacagggacccccaggaagaccc
ggcttcccaggacagaacggacagaatgggcaaccaggagaaagaggtcaaccaggagaa
aagggtgagaaaggatctccaggtgttggagtccaaggccccagaggacctgcaggaccc
cccggtccccaagggcagggcagacctggcagccagggtccctcagggcgacctggaaat
cctggaaaccctggtcgaccaggggtccccggacccgtcggctccgctgggccaccgggc
tactgcgaccagaacgcctgtgtgggctacaatgtcggagagggtgaggatgtcactgat
ggcggcgctatccctgcagtccaactgccgcccaacgtcttccagaactacggcgaggtt
gaggaggacgacccctaccgctactaccagcccaactatccggccccgcggcccgtggag
cctgacgaccccgcgctcgccctggacgacatcgaactgaggtcccccggcatccaccgc
agcacccggagcctggagggagaggagaagagagtcgggccgaagaggagactaaagaga
ggagcgaagacgctgcctggactaattaaatga
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