Siniperca chuatsi (mandarin fish): 122864397
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Entry
122864397 CDS
T08948
Symbol
rxrba
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03320
PPAR signaling pathway
schu04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
122864397 (rxrba)
03320 PPAR signaling pathway
122864397 (rxrba)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122864397 (rxrba)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
schu03310
]
122864397 (rxrba)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
122864397 (rxrba)
Nuclear receptors [BR:
schu03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
122864397 (rxrba)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
122864397
NCBI-ProteinID:
XP_044027688
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Position
LG17:5082552..5105640
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AA seq
470 aa
AA seq
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MGDSRDSRSPDSSSVSSPPSGQRSPPLVPSAAASMTSLPPITTSGVNSPISSIGSPFSVI
SSSLGSPCLPGTPSVGYGPISSPQINSTVSMSGLHAVSSSDDVKPPLGLKQLSSHSPGPM
LSQKRLCSICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCMVDKRQRNRCQ
YCRYQKCLAMGMKREVAKMNDRSVQEERQRNKEREGEVESTSAVNEEMPVEKILEAEMAV
EQKTELHADGSSGGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAG
WNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRAHNAEVGAIFDRVLTE
LVSKMRDMQMDKTELGCLRAIILFNPDAKGLSNSSEVELLRERVYASLETYCKQKYPDQQ
GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtagagattcccgcagcccagacagttcgtctgtgtcctcccctccatcg
gggcaacgctcgcctcctctggttccctcagccgcagcttccatgacctccctgcctccc
atcaccaccagcggagtcaacagccccatcagtagcatcggctcccccttttccgtcatc
agctcttcactgggatctccctgcctacctggcacgccatcggtgggctacggccccatt
agcagcccgcagatcaactcaacggtgtccatgtcagggctccatgcagtgagcagctcc
gatgatgtgaaacctccgttgggcttgaagcagctgtcgtcccacagcccagggccgatg
ctttcccagaaacgcctttgttccatctgtggagacagatcctctggtaagcactacggt
gtctacagctgtgagggctgtaaaggcttcttcaagcgtaccgtgcgcaaagacctgacc
tacacctgtcgggacaataaagactgtatggtggataagagacagaggaaccgctgccag
tactgccgctaccagaagtgcctggctatgggcatgaagagagaagtggccaagatgaac
gacagatctgtccaagaggagcgacagaggaacaaggaacgagaaggcgaggtggagtcg
actagtgcggtgaacgaggagatgccagtggaaaagattttggaagcggagatggctgta
gagcagaagacagagcttcatgcagatggaagctcaggcggcagctctcccaatgaccct
gtcaccaacatctgtcaggcagcagacaagcagctcttcactctggtggagtgggccaag
aggatccctcacttctctgagctgcccctggacgaccaggtgatcctgttacgtgcaggc
tggaatgaactcctgattgcatcgttctcccatcgctccatctcagtgaaggacgggatt
ttactggccactggcctgcatgtccacaggaacagtgctcacagtgcaggtgttggagcc
atctttgacagggcgcacaatgccgaggttggggccatatttgacagggttttgacagag
cttgtaagcaagatgagagacatgcagatggacaagaccgagctgggctgccttcgagcc
atcatcctcttcaacccagatgccaagggtttgtccaactccagtgaagtggagctcctg
agagagagggtctacgcatctctcgagacttactgtaaacagaaataccccgatcagcag
ggcaggtttgcaaagctcctcctccggctcccagcactgcgctccattggtctaaaatgc
ctggagcatctgttcttctttaaactgattggtgacacacccattgacaccttcctgatg
gagatgctagaggcgcctcaccagctcacctag
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