Siniperca chuatsi (mandarin fish): 122864865
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Entry
122864865 CDS
T08948
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122864865 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122864865 (cnot3b)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122864865 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122864865 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
7tm_6
Motif
Other DBs
NCBI-GeneID:
122864865
NCBI-ProteinID:
XP_044028524
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All DBs
Position
LG17:complement(4656801..4695641)
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AA seq
938 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGTWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKKFIEKHRHHI
RMLETILRMLDNDSVQVDSVRKIKDDVEYYLDSSQDPDFEENEFLYDDLDLEDLPQTLVA
TSPPGHSHLDDEIFQHSSSTPTSTTSSSPIPPSPATCTTENSEDDKKRGRSTDSEVSQSP
VKNGNPSSSLSSSSSSSSSSSSSSSSSSSSSSSGSGLTSSSLVSMVTIAGGGSSGSGGNS
HHNNSGGLLSNTSAGSYSNATQQQPQPHPSAQQQQAKNLVSSSSSAPIAIPSTSTNSHLA
SSAPSPPNASTQGLFTSNTQSQVLSGPPPTSNSLGLSLGLSLGKGGMSGSITTSPMSGSL
GLSGMPASLSTMAGLLSSSTPAPYAQAAASGAVGSGLPGSLGGVSSTTTNSALGSIGSGS
ITVGGPTSSTGGLLGSAPVVTSIGSGILGLGSGQSGVQGSSLVSLSPVGGLAPGSGVGVI
GSNIGSSGSAGSGVVGGNSSLSVRPPSRQKQNGSSSYSAVVADSTTDSALNSASQSQSSQ
PSSLTSTANQPKDTGPSLLGSLSLSSSSPSPAFYSEAKMVSGGSLLNGPLSYSQSSDVIK
PQEPLSSLKSMAERAALSSGMEGDVPSLHLTPDIFPSSTTAPSGPPTAPQPSLSEVSIPP
SLGVCPLGPVPVSKDQLYQQAMEEAAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQMPPP
HSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTI
TDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggccgataaaaggaaacttcaaggtgaaatagatcgatgtctgaaaaaagtagcggag
ggagtggaacagtttgaagacatttggcaaaaactccacaatgcagccaacgcgaaccag
aaggagaaatatgaagcagacctcaaaaaagagattaaaaagctacagcgtcttcgagac
cagatcaagacgtgggtggcatccaacgagatcaaagacaaaaggcagctagtagagaac
cgcaaactcatagaaacgcaaatggagcggttcaaaatagtggaaagagaaacgaagacg
aaagcgtactcaaaagaagggttgggtctggcccaaaaggtggacccggcccagaaagag
aaggaggaggtcggcacgtggctaacgaatacgatagacacgttgaacatgcaggtggac
cagtttgagagcgaagtggagtctctttcagtccagacgagaaaaaagaaaggagacaag
gagaagcaggaccggattgaggagctgaagaagttcattgagaagcatcggcaccacatc
cggatgctggagaccatactgaggatgctggacaacgactcagtgcaggtggactcggtc
aggaagatcaaggatgatgtggagtattatctcgactcgtcacaggatccagactttgag
gagaatgagtttctatatgacgacctggacctggaagacctccctcagacgctggtcgcc
acctccccaccgggacactcgcacttggacgacgagatcttccagcactccagcagcaca
cccacctccaccacctcatcttcacccatcccgccgtcacctgccacttgcactacggag
aactcagaagatgacaagaagaggggacgttcaacagacagtgaagttagtcagtcacct
gtgaaaaacggaaacccttcttcctcgttatcctcttcctcctcctcctcttcctcctcc
tcttcctcctcctcctcctcctcctcctcttcttcttccggttcgggactgacctcatcc
tcactggtctcgatggtgaccatcgctgggggaggaagcagtggctctgggggcaacagt
catcacaacaactcggggggtctcctctccaacacttctgctggcagctacagcaacgcc
acccagcagcagccgcagccgcacccgtcagcacagcaacaacaggccaaaaacttagtg
agctcctcctcctcggctcctatcgccattcccagcacctccaccaacagccacctggcc
tcctcggccccttctccccccaacgccagcacacaggggctcttcacttcaaacacccag
tcccaggttctgtcagggcccccgccaacctccaacagccttggcctcagcctgggcctc
tctctggggaaaggcggcatgtccggctccatcaccaccagcccgatgtccgggagcctg
ggcctttcagggatgccggcatccctgagtaccatggcaggcctcctgtccagctccacc
ccggcaccctatgctcaggcagctgcctcaggcgcggtcggctccggcctaccgggctcc
ctgggcggcgttagctcaacgacgaccaacagcgcactgggctccatcggcagtggaagc
atcacagtcggcgggccgacatcctcaacaggaggtctgctgggctcagcgccggtggtg
accagcatcggctctgggattctgggtttgggctctggtcagtcgggggtgcaggggtct
tccctggtgtcactgagcccagtaggaggtttagcgccaggtagcggagtaggagtcatc
gggagcaacatcggcagctcgggatcagcagggagcggcgtggtgggaggaaactcgtcg
ctctccgtcaggccaccaagccgccagaagcagaatggtagctctagttacagtgctgtg
gtagcagacagcacaacagactccgccctcaacagtgccagccaatcacaaagcagccaa
ccatcgtctttgacctccacagccaatcagcctaaggacactggtcccagtttactgggc
tctttgagtttgtcgtccagctccccatcgccggccttctacagcgaggccaaaatggtg
agcggcggcagcctgctgaacgggccgctgtcctactcgcagtcctccgacgtcatcaag
ccccaggagcctctgagcagcctgaagtccatggccgagcgagcagcactcagctcaggg
atggagggagacgtgccctccctgcacctcaccccagacatcttccccagtagcactacg
gccccctcgggccccccgacagcacctcagccctcgctgtcagaggtcagcatccccccc
tcattgggggtctgcccgctggggccggttcccgtgtccaaagaccagctctaccaacag
gccatggaggaggcggcgtggacgcacatgccccacccgtctgactcggagaggatcagg
cagtacctgatgaggaacccgtgccccaccctgcctttccaccaccagatgccaccaccc
cactccgacactgtagagttttaccagaggctttccacagaaaccctcttcttcatcttt
tactacctggagggcactaaggcccagtatctggcagccaaggccctgaagaagcagtca
tggaggttccacacaaagtacatgatgtggtttcagaggcacgaagaacccaaaaccatt
actgatgagtttgagcagggaacgtacatttactttgactatgagaaatggggccagcgg
aagaaggaaggcttcacgtttgagtaccggtacctggaagaccgagacctccagtga
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