Siniperca chuatsi (mandarin fish): 122865228
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Entry
122865228 CDS
T08948
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122865228 (chd1)
03036 Chromosome and associated proteins [BR:
schu03036
]
122865228 (chd1)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
122865228 (chd1)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
122865228 (chd1)
SLIK complex
122865228 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
HDA2-3
ResIII
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
122865228
NCBI-ProteinID:
XP_044029289
LinkDB
All DBs
Position
LG18:complement(24185605..24222243)
Genome browser
AA seq
1792 aa
AA seq
DB search
MAGRSEDESVSNSSGESSNSDDESGSGSGSASASGSGSSSSSSSSSSQSGSSDSGSGSDS
GSQSDSDTEKSKEKMEPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQRQS
SSNSGSDEDSSSSDESDSSSGSKRRRNSGSSDSGSGSGSGSGSGSDSSAEDNSDETASDY
EPSHKIKSRKPPTKMNFRNGKKSSTQRKKPPKCSSEYEDDNYKKVASVGPRRQATVNISY
KEDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMDSRIGRKRATGSATTVYAVEADGD
PNANFNPNKEAGESQYLIKWKNWAHIHNTWETEETLKLQNVKGMKKLDNFKKKEQEKKKW
LKAASPEDIEYFNCQEELMDDLHFQYQLVERILGHSNQKSAAGYPDYLCKWQGLPYSECS
WEDGALIAKKFQKCIDDYMSRNQSKTIPSRDCKVLKQRPRFVPMKKQPVYIGGDGLELRD
YQLDSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFNEHQLYGPFLLVVPLSTLT
SWQREIQLWAPQMNVVVYLGDISSRNMIRTHEWMHVHSKRLKFNILLTTYEILLKDKSFL
GSVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFHSWELFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQK
QYYKWILTRNYKALSKGTKGSSSGFLNIMMELKKCCNHCYLIKPPEDNEFLIKAEALQQL
IRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILAEYLRSRQFLFQRLDGSIKGEMR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSAPFNKE
ELSAILKFGAVELFKEQEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVAN
FSMMEDEEIDIDSERSQRSWDEIIPEEQRRRMEEEERQKELEEIYMLPRMRNCAKQISFN
ASEGRQSRNRRYSGSDSDSPSDRKRPKKRGRPRTIPRENIKGFSDAEIRRFVKSYKKFGG
PLERLDAIARDAELVDKSEHDLKRLAEMVHNGCVRTLRENPCGPEKTSGGRRGKVKGPTF
RISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDIDWGKEDDSSLL
IGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKKEA
QKQAGTANSRKRKPRSKKSKTLNPTKTDEVMKSTSSDPPSDKRSDDEDEIEEEKEVAPVK
APRRRGRADRVVVEEEEEEEEDNDDEEPEQEEVSSSGEREVKGKEIKKEGKKEKEEESWD
IRETKEPKEKKETKPQEAVHKQEESMEKNEVKTDVRERTKKASDVPAHITASGESVPISE
ESDELDQRTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKE
YSNPDQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTRSINTHGYK
HADIERLKDNSHQDESSRDSCSSDRHQPSGRYHESSSSMERHSSESHRKTTGGESRKRPY
SSFSNGKDHRDHYRSDSRDRDRQDRYYNDSKHRKLEEFRSSRDHRLDMKDHSHSDHRSSY
RYHSDWQTEQRASASGPRSPRDQRSPMGHHSPFDYSSDHRSTPEQIWSSRKT
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggctggacgcagtgaggatgaaagtgtaagcaacagcagtggagagtcaagtaattct
gatgatgaatccggttctggatcgggctcagcatcagcgtccggctcaggctccagttcc
agctcctccagcagcagcagccaatcagggagcagtgactcaggtagtggctcagactct
ggcagccagtcagattctgacacagagaaatccaaggagaagatggaaccgccaaataag
tcaaacatcgacggagcggagttctggaagtccaacccaagtatcctagcagtgcaaaga
tctgctatgctcaggaaacagcagcttcagcagcagcagcagcagcagcagagacaaagc
tcctcaaatagtggatccgatgaggactcgtcaagtagcgatgaatctgactcatcaagt
ggatccaaaagaagaagaaattcaggctcctctgactctggatcgggttctggatctggg
agtggttctggatcagactcatcagcagaggacaacagtgacgaaacagcatcagactat
gagcccagtcacaaaatcaaaagcagaaagcctccaaccaagatgaattttcggaatggg
aagaaaagcagcacccagaggaagaaacccccaaagtgttcttctgagtacgaggatgat
aactacaagaaggtggcgtctgtgggtccacgccggcaggccacagtcaacatcagctac
aaggaggatgaggagctgaagactgactcagacgacctagtggaagttctgggtgaagat
gttccgcagcctgaggaagacgagtttgaaacactggagagagtgatggacagcagaata
ggaaggaaaagagcaacaggaagcgcaaccaccgtatatgctgtagaagcagacggggac
cccaatgccaacttcaatcccaacaaagaggctggtgagagccagtatttgataaagtgg
aagaactgggcccatatccacaacacttgggagaccgaggagacactcaagttacagaac
gtcaagggcatgaagaaactggataatttcaagaagaaggaacaggagaaaaagaaatgg
ttaaaggcagcttcaccagaagatatagagtatttcaattgccaggaagaattgatggat
gacctgcactttcaataccaacttgtagagcgaatcttaggacattcaaaccagaagtca
gcggctggttacccggactacctgtgtaagtggcagggtttaccatactcagagtgtagc
tgggaagatggtgctctgatcgccaaaaagttccagaaatgcatcgatgactacatgagc
agaaaccagtccaagaccattccttccagagactgcaaggtgctgaaacagagacccagg
tttgtgcccatgaagaagcagcctgtttacataggaggtgatggactggagctcagagac
taccagttggacagtttgaactggatggcccactcctggtgcaaaggcaacagttgcatc
cttgctgatgaaatgggtttagggaagaccatccagaccatctccttcctcaactatcta
tttaatgagcaccaactgtatgggcccttcttgctggttgtgcctctctctacactaacc
tcctggcagagagaaatccagctctgggcccctcagatgaatgtcgtggtctacctggga
gacatcagcagcaggaatatgatcaggacacatgagtggatgcatgtccatagcaagaga
ctgaaatttaacatcctcctcacaacatatgagattcttctcaaagacaagtcatttttg
ggcagtgttaactgggccttcattggtgtggatgaggcgcaccgactgaagaatgatgac
tccctcctctacaagaccatgattgacttcaagtccaatcacaggcttctgatcacagga
acgccactgcagaactccctgaaagagctgtggtccctgctgcacttcattatgcccgag
aagtttcactcatgggagttgtttgaggaggagcatggtaaaggcagggactcgggctac
accagtctgcacaaagagctggaaccttttctactgcgccgagtcaagaaggatgtggag
aaatctcttcctgccaaagtggagcagattctcagagttgagatgagtgctatccaaaaa
cagtattataaatggatcttgaccaggaactacaaggctctgagtaaaggtacgaaaggc
agctcgtcgggcttcctgaacatcatgatggaactgaagaagtgttgtaaccactgttac
cttatcaagcccccagaggacaacgagttcctcatcaaagctgaagccttacagcaattg
atccgcagcagtgggaagctggttctgttggacaaactgctggtgcgtttgaaggagcga
ggccaccgagttctcatcttctcccagatggtacggatgctggatatcctggctgaatac
ctgagaagccgacagttcctctttcagagattagatggctccatcaaaggggagatgagg
aagcaggcgttggatcattttaatgctgagggctcagaggatttctgcttcctgttatca
acgcgtgctggtggtttgggtatcaatctggcatcggctgacacagtagtcatctttgac
tcagactggaacccccagaatgatctgcaggcccaggccagagcccacaggatcggacag
aaaagacaggtgaatatctaccgtctggtgacaaagggctcagtggaggaggacatcatt
gagagggcgaagaagaaaatggtgctggaccaccttgtcattcagaggatggacaccaca
gggaaaactgtcctccatactggtgctgctccctcaagttcagcgccattcaacaaggag
gagctgtctgccatcctgaagtttggtgctgtggagcttttcaaagagcaagagggtgag
gagcaggagcctcaggaaatggacattgacgagatcctcaaaagagctgagaccagggag
aatgatcctggaccctcaacagtgggagaagaactgctgtctcagttcaaggtggccaac
ttttccatgatggaggacgaggaaatagatattgactctgaacgtagtcagcggagttgg
gacgaaatcattcctgaggagcagaggagaagaatggaggaggaggagagacagaaagag
ctggaggaaatctatatgctgccacgcatgaggaattgtgccaaacagataagctttaac
gctagtgagggccggcagagcaggaacaggaggtattctgggtctgacagtgactccccc
tctgaccgaaagaggccgaaaaaacgaggacggcctcgaaccataccacgagaaaatatc
aagggcttcagcgatgctgagatccggaggtttgtcaagagttacaaaaaatttggagga
ccactggaaaggttggatgctattgctcgtgatgctgaacttgtggataagtctgaacat
gacctgaaacgcttggcagagatggttcacaacggctgtgtgagaacactacgagaaaac
ccctgtggaccagagaagacctcaggaggaagaagagggaaagtgaaaggccctacattc
aggatctctggagtccaggtgaatgccaagcttgttatctcccacgaggaagagctggct
ccactccacaaggccattcctgctgaccctgaggagagaaagaagtatatgattccatgc
cactcgaaggcagcacactttgacattgattgggggaaggaggacgactccagcctcctc
ataggaatctatgagtacggttacggcagctgggagatgatcaagatggatccggacctc
aatctcacacacaagctcctaccagacgaccctgacaagaagccacaggccaaacagcta
cagaccagagcagactacctcattaagttgctgagcaaggacctggccaaaaaagaagca
cagaaacaagcagggacagccaattcacggaagaggaaaccaagaagtaaaaagagcaaa
actctcaatccaactaagacagacgaggtaatgaagagcacgtcctcagatcccccatca
gacaagaggtcagatgatgaggatgaaattgaggaggaaaaggaggtggccccagtgaag
gcaccaaggaggcggggccgagcagacagggtcgtggtggaggaggaggaggaggaggag
gaggacaatgacgatgaggagcctgagcaggaggaggtttcttcatcaggggagagggag
gtcaaaggaaaagagatcaaaaaagaaggcaaaaaggagaaggaagaggaaagttgggac
attagagagacaaaggagccaaaagagaaaaaagaaacaaagcctcaggaggcggtacat
aaacaagaggagagcatggaaaagaatgaagtaaagactgatgtacgagaacgaacaaag
aaagcctctgacgtgccggctcatataacagcaagtggagagagtgtgccaatatctgag
gagtctgatgaactggaccagaggaccttcagtgtgtgtaaagagaggatgcggccggtg
aaagcagcgctgaagcagctggacagaccagagaaagggctgtcggagcgtgagcagctc
gaacatacaagacagtgcctcattaagatcggagaccacatcactgagtgtctgaaggag
tattcaaatcctgaccagatcaaacagtggagaaaaaacctgtggatatttgtttccaaa
ttcactgagtttgatgccaggaaactacataaactgtacaagcatgcaatcaagaaaaga
caagagaacgcacaggcaatggagcagaacactagaagtataaacacccacggctataaa
catgcagatattgaaaggttgaaggacaactctcaccaggacgagagcagtagggacagc
tgcagctcagacaggcatcagccttcaggtcgataccatgagagcagcagcagtatggag
agacacagctctgagtcccacaggaagaccacaggaggagagtccaggaaaagaccgtac
tcctcctttagcaacggcaaagaccacagggaccactacagatcagacagcagggacaga
gacagacaggacagatactacaacgacagtaagcacaggaagctggaggagttccgctcc
agcagagaccatcgtctggacatgaaggatcattcccattcagaccaccgctcttcctac
cgctaccactcagactggcagacagagcagcgagcctcagccagcggaccccgctctccc
cgagaccagcgctcgcccatgggacaccactcaccttttgactactcgtcagaccacagg
agcacaccggagcagatctggagcagccgcaagacataa
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integrated database retrieval system
