Siniperca chuatsi (mandarin fish): 122865491
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Entry
122865491 CDS
T08948
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122865491 (rc3h2)
04121 Ubiquitin system [BR:
schu04121
]
122865491 (rc3h2)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
122865491 (rc3h2)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122865491 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_2
zf-RING_UBOX
zf-CCCH_4
zf_CCCH_4
Prok-RING_4
zf-C3HC4
zf-C3HC4_4
zf-RING_4
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
122865491
NCBI-ProteinID:
XP_044029916
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Position
LG18:14794166..14821446
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AA seq
1155 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDSSGHQPISLGCSHTVCKTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLQLVGAQVPDVQPVSLSTAAEVENYEVCRVCVEELALYLKPISGAKGVAT
LSPSVLSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDGLKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTSLRPHLELLANI
DHNPDAPAPSWEELESVMLAVKLVVHGLVEFIQNFSKKSHDTPQPQANSKYKTSMCRDLR
QQGGCPRGTNCTFAHTQDELEKFRLRNKKSNSVGRAFPLAPGVMGKTFTMEGSIHTDVSA
GVGQGLKGTGENTATLTEGVPGLTHPQLISRGADMMEEMKRVMPNGSNGANGSNGLSGTN
RNISGSTEQKSISPPRTPVSHSSASSPLTTAGRGDSGAPMPKHGQFVLRAPHPSQASELY
YQEPHSAYDTPHYQATSGSYYPSSLHPPHKHCMARFLRSSNVPESSLPPSIGPPPSSYPS
DPQMSHPPSSSSSGYPPHPPRDRMGPPAFHTHPGQPQYGPLAAAHGVYAPLYDSRRVWRP
QLYHREDARSNSLPPEVLHSSVYQPPLRERFNSLDSNYCSGAEHRAGLHRDYGRVPLGYE
DLFRRKQEQWAHHHHHHGASRPSQSSPIFTIDFGTEHVESSGGQCVGCRFRGDESLAHYS
PWSCGTIGPCLSPFEPETLTHTSAHSCSERSELDSNGGGGGGVSSSGVGKRWLHSLDHYR
RLKDEDPIIPFSEGPIISKWGAISRASRTGYHTTDPVQATACQGSANTTPINFKDYNPHL
DHSDYRWSSRGSDSSSHSSFLESEQLCASELHVRQTSISSGEKIMSDLQVRQTAYCQDRD
RVESELDPDRDIELELCALDMEDSDHQEIKSQESLDLSAPQSQDTSHLLPPPCSSPLLSS
PVEEHLRTEGPSTEKVDAHLLKKMAFRKSLSPGGLVSGGMGVGKLVLRTGPPRLGDAPTR
ACPETPMTEMLLNGS
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaggcggcccagtggacagagttcctgtcctgtcccatctgctacaatgag
tttgacagcagcggccaccagcccatcagcctgggctgctcccacacagtgtgtaagacc
tgcctacacaaactgcaccgcaaggcctgcccctttgatcagacaccaatcagcaccgat
atcgacctgctgccggtcaactgtgccctgctgcaactggttggagctcaggtcccagac
gtgcagccggtgagcctgagcactgcagcagaagttgagaactacgaggtgtgcagggtg
tgcgtggaagagctggctctctacctaaaaccaatcagcggagcaaaaggtgtggcgact
ctgagtccgagtgtgctcagtcggccaatgcagaggaagctggtgaccttggtgaactgc
cagctggtggaggaggagggccgtgtgcgggctgtgcgggcaggccggtcgctgggggaa
cgaaccgtaaccgagcttatcctgcagcaccagaacccccagcagctctctgccaacctc
tgggcagcggtgagggcacggggctgccagttcctgggacctgctatgcaagaagatgga
ctgaagctagttttactggctctggaggatggctcagctttgtccaggaaggtgttggtt
ttgtttgtagtccaaaaacttgaggctcggttcccccaggcctccaaaaccagcataggc
cacgtggtgcagcttctctacagggcctcctgcttcaaggtgactaagcgtgatgaggac
tcctcactgatgcagctgaaggaagagtttcggacatacgaggctctaaggagagaacat
gacgctcagatcgtccacatcgccatggaggcgggcctacgaatttcacctgagcagtgg
tcttccctgctgtacggagacctggtccacaagtcacatatgcagtccattattgacaag
ttgcagtctccagagtcgtttgcaaagagcgttcaggagctgacaatcgtcctgcagagg
acaggagaccctgctaacctcacaagccttagaccacacctagagctactagccaacatc
gaccacaacccagatgccccggcaccatcgtgggaggagctggaaagtgtgatgctggca
gtgaagttggtggttcacggacttgtggaattcatacagaacttcagcaagaagagccac
gacactccacagcctcaggcgaacagcaagtacaagaccagcatgtgcagagaccttcgt
cagcagggaggctgtccccgaggaaccaactgtacatttgcacacacacaggatgagctg
gagaaatttagactgaggaacaagaagagcaacagtgtgggccgtgcgttccctttagcg
ccgggggttatgggtaaaacctttaccatggagggcagcatccacacagatgtgtctgca
ggagtggggcaggggctcaaaggcacaggggagaatacagccaccctgacagagggagtg
cctggactgactcacccccaactgatctccagaggggctgacatgatggaggaaatgaag
agagtgatgccaaatggatccaatggggctaacgggtccaacgggctatctgggaccaac
agaaacatatcagggtcaactgaacagaagtccatctctcctcccaggactccagtcagc
cactcctcagcgtcgtctcccttgacaacagctgggcggggtgatagtggcgctcctatg
cccaaacatggtcagtttgtgctgcgtgcaccgcatccttctcaggcatcagagctgtac
tatcaggagccccactctgcatatgacacgccccattatcaagcaacctcaggttcctat
tacccatctagtcttcatcctcctcacaaacactgcatggctcggttccttcgatcctcc
aacgtcccagaatcctctctgccgccttcgattggccctccaccatcttcctaccccagt
gaccctcaaatgtcacacccaccatcctcctcatcgtcggggtacccaccacacccgcct
agagatcggatgggacctcctgccttccatacccacccggggcagcctcagtatgggcct
ctggcggctgctcatggtgtttatgctcccctctatgacagcaggagagtatggaggcct
cagctgtaccacagagaggatgccaggagtaactcactgcccccagaggtgctgcattcc
tccgtctaccagcctccactcagggagagattcaactctctagacagcaactactgctct
ggagctgaacaccgtgcagggctacacagggattatggccgtgttcctctgggctacgag
gatctgttcagaaggaagcaggaacagtgggctcatcatcaccaccatcacggcgccagc
aggccctcccagtcctcccccatcttcaccatcgattttggaactgagcacgtggagagc
agtggaggccagtgcgtgggttgcaggttcagaggcgatgaaagtttagcgcactactct
ccgtggtcctgtggtaccatcggcccctgtctcagcccctttgagcctgaaacactcaca
cacacctcggctcactcctgctcagagcgctcggagttggatagtaacggaggtggaggt
ggtggcgttagcagtagtggtgtcgggaagcgatggctgcattcattggatcactaccgg
cgcttgaaagacgaggacccgatcattcccttcagtgaggggcccattatctccaagtgg
ggtgccatatccagggcatctcgcacgggctaccacaccaccgaccctgtccaagccacg
gcctgccagggcagtgctaacaccacacccatcaactttaaagattacaacccccacttg
gatcacagcgactacaggtggagctccagaggatcagactcttctagccactccagtttc
ctagagagtgagcagctttgtgcatcagagctccacgtccgtcaaacttcaataagcagt
ggagagaaaatcatgtctgatctgcaagtccgtcagaccgcctactgccaggatcgggac
cgggttgagagcgaactggacccggatcgggacattgagctggaactgtgcgctcttgac
atggaggattcagaccaccaggagatcaagtctcaggagtctttagacctgtctgcccca
cagtctcaggatacttcccaccttctcccacctccctgctcctctcccctcctctcttct
cctgtagaggagcacctccgaacagagggtccttcgacagaaaaggtggatgctcacctg
ctgaaaaagatggccttcaggaagtctttgtctcctggagggttggtctcaggaggtatg
ggcgttggcaagctggtgctgcggactggacctcctcgactgggggacgctccaacgcgg
gcttgtcctgaaacacccatgacagagatgcttctcaatggaagctaa
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