Siniperca chuatsi (mandarin fish): 122865555
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Entry
122865555 CDS
T08948
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122865555 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122865555 (mtrex)
03041 Spliceosome [BR:
schu03041
]
122865555 (mtrex)
03009 Ribosome biogenesis [BR:
schu03009
]
122865555 (mtrex)
03016 Transfer RNA biogenesis [BR:
schu03016
]
122865555 (mtrex)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122865555 (mtrex)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
122865555 (mtrex)
Spliceosome [BR:
schu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122865555 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
122865555 (mtrex)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
Pre-60S particles
Helicases
122865555 (mtrex)
Transfer RNA biogenesis [BR:
schu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
122865555 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
122865555
NCBI-ProteinID:
XP_044030088
LinkDB
All DBs
Position
LG18:8804844..8828590
Genome browser
AA seq
1077 aa
AA seq
DB search
MCIFLLIHVGLANFWTPQLPYRKCYRGATSCCIVGSVPLSIMADAFGDGLFSVFDDEQQT
TTSKKIPASLAPDIGRAEGKNATDKDAGPSARVKREADSDGGEEVVFGKKPRHETVSAND
LNLAEFMPQVKVEQVETVEGCSHEVALPASDEYKPLKARVGKAAKEYPFVLDPFQREAIL
CIDNSESVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDV
GLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDAERGVVWEET
IILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGLH
LVVDENGDFREDNFNTAMQVLRDAGDSGGSGGGKWDPRGRKGGTKGPSSVFKIVKMIMER
NFQPVIIFSFSKKECEAYALQVAKLDFNRDDEKRLVEEVFNNAVDCLSDEDKKLPQVEHV
LPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKF
DGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMVDEKMSPAVGKQLLKGSADPLNSAFH
LTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVEKIKKYEEQYHAIEIPNEEGVV
TYFKIRQQLAKLGKEIQEFTHKPKYCLPFLQPGRLVKVKNDDADFGWGVVVNFCKKSNVK
TSTDSEPLYVVEVLVHCSKDSVKDSATEAAKPAAPGQTGEMQVVPVMLHLLTSISTVRLY
IPKDLRPFDNRQLLLKSIQEVQKRFPDGVPLLDPIDDMGIKDPALKKVIQKVEAFEHRMY
SHPLHSDPNLESVYSLCEKKALIAADVRTAKRELKKARTVLQMDKLKCRKRVLRRLGFAS
PSDVIEMKGRVACEISSGDELLLTEMIFNGLFNDLTVEQATALLSCFVFQENASEMPKLT
EQLAAPLRQMQECAKRIAKVSADAKLEVDEETYLNQFKPHLMDVVYAWANGATFAQICKM
TDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgtgtatttttcttctcattcatgtcgggttggctaacttttggacaccacagctgccg
taccggaagtgttaccggggcgcaacctcgtgttgtattgtgggaagtgtgcccctatca
atcatggcagacgcctttggagacggtttgttcagcgtgtttgacgatgaacaacaaacg
accacaagcaaaaagatacccgcttctttggcaccagacataggaagagctgaaggaaaa
aatgccactgacaaagatgctggtccatctgcccgggtcaagagggaggcagacagcgac
ggcggagaggaggtggtgtttgggaagaaacctcgacatgagacagtctctgctaatgac
ctaaatcttgcagaatttatgccccaagtgaaggtcgagcaagttgagactgtggaagga
tgctcacacgaggttgctttgcctgccagtgatgaatataaaccactgaaagcgcgagtg
ggaaaagcagccaaggagtacccttttgttcttgacccgttccagcgtgaggccatctta
tgtattgacaacagtgagtctgtacttgtgtctgcacacacctctgctggcaagactgtc
tgtgctgaatatgccattgcattggccctcagagagaagcagagagtgatcttcaccagc
cccatcaaggccctctccaaccagaagtacagagagatgtacgaggagttccaggatgtg
ggactgatgaccggcgatgtcaccatcaaccccaccgcctcctgccttgtcatgacaaca
gagatcctgaggagcatgctgtacagaggctccgagatcatgagggaagtggcgtgggtc
gtctttgatgagatccattacatgagagatgcagagcgtggtgtggtgtgggaggagacc
ataattcttcttcctgacaatgtgcattacgtcttcctgtcagccaccatccccaatgcc
agacagtttgcagagtggatttgccacctacataagcagccatgccatgtggtctacaca
gactaccgtcccactccattgcaacactacatcttcccagcagggggtgatggactccac
ctggttgttgatgagaatggagactttagagaggacaatttcaacacagctatgcaggtt
ctgagagacgcaggggattctgggggcagcggagggggcaagtgggacccaagaggacgg
aaaggaggcactaaaggtccatccagtgtgttcaagatagtgaagatgatcatggagagg
aacttccagcctgtcatcattttcagcttcagcaagaaagagtgtgaggcctacgctctg
caggtagccaaactggactttaacagagatgacgagaaacgtctggtggaggaagtattc
aacaacgcagtggactgtctttcagacgaagacaagaaactcccccaggtggagcatgtg
ctgccgctgttgaagagggggataggaatccaccatggaggcctactgcccatcctgaaa
gagaccatagagatccttttttctgaaggcctgctcaaggccctgtttgctacagagaca
ttcgccatgggcatcaacatgccggctcgcactgtgctcttcaccagcgcacgcaagttt
gatggcaagaatcaccgctttattacatcaggtgagtacatccagatgtctgggcgagct
gggaggagaggaatggacgacaggggaattgtcattttcatggtggacgagaagatgagt
ccagctgtaggcaaacagctgctcaagggctctgcagaccctttgaacagtgccttccac
ctgacctacaacatggtgctcaacctgctgcgtgtggaggagatcaacccagagtacatg
ctggagaagtctttctaccagttccaacactacagggctttgcctggtgttgtggagaaa
attaagaagtatgaggagcagtaccacgccattgagattcccaacgaagagggcgtggtc
acttactttaaaatcagacagcagctggccaaactgggtaaagagatacaagagttcacc
cacaaacccaagtactgcttgcccttcttgcagcctgggcgacttgtcaaggtaaaaaat
gatgacgctgactttggctggggagttgttgtaaacttttgcaagaagtctaacgtgaag
accagtacagactctgagccgctgtatgtggtggaggttttggtccactgtagtaaagac
agtgtaaaagattctgcgactgaagctgctaaacctgctgctccagggcagactggagag
atgcaggtggtccctgtgatgctccatctcctgacttcgatcagcacagttcggctttac
atccccaaagacttgaggccctttgacaacagacagctcttgctcaagtctatacaggag
gtgcagaaacgtttcccagatggcgttcctctgctcgaccccatagatgacatgggcatc
aaagaccctgcactgaagaaagttattcagaaagtggaggccttcgagcaccgcatgtac
tcgcaccccctgcacagtgaccccaacttggaatctgtctattctctctgtgagaagaaa
gctctgatcgcagcagacgttcgaacagccaagcgagagctgaagaaagctcggaccgtc
ctgcaaatggacaagctgaagtgcaggaagagagttctccgacgccttggtttcgccagt
ccctccgatgtcatcgagatgaaagggcgggttgcctgtgaaattagcagtggcgacgag
ctcctgctgacggagatgattttcaacggtctcttcaacgatctgacggttgaacaagcc
accgccctgctgtcctgcttcgtcttccaggagaatgccagcgagatgccaaagctgact
gaacaacttgcagctcccttgagacaaatgcaggagtgtgcaaagcgcatagccaaggtt
tctgcagacgccaagctggaggtggacgaggagacttatctaaaccagtttaaaccccac
ctgatggatgtggtgtacgcctgggctaacggcgccacgtttgctcaaatttgcaagatg
actgacgtctttgaagggagcatcatccgctgcatgcgccgcctggaagaggtactgaga
caaatgtgttctgcagccaaggccataggcaacactgaactggagaacaagtttgctgaa
ggcataacgaagatcaagagagacattgtatttgctgccagtctctacctataa
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