Siniperca chuatsi (mandarin fish): 122865769
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Entry
122865769 CDS
T08948
Symbol
ddx56
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122865769 (ddx56)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122865769 (ddx56)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
Pre-60S particles
Helicases
122865769 (ddx56)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_YunG-like
Motif
Other DBs
NCBI-GeneID:
122865769
NCBI-ProteinID:
XP_044030556
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Position
LG18:1597379..1608365
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AA seq
561 aa
AA seq
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MAAERLQFHEMGLDDRLLKAVADLGWSQPTLIQEKAIPLALEGKDLLARARTGSGKTAAY
AVPVIQRILASKQSVREQDVRALILVPTKELGQQVQTMIRQLTAFCSRDVRVADISGKAD
LSAQRPILMEKPDVVVGTPSRVLAHLNAQNLVLHSSLETLVVDEADLLFSFGFEADLKNL
LCHLPKIYQSFLMSATLTEDVQALKELLLHNPVILKLQGSQLPDSSQLQQYSVKCEEEDK
FLLIYTLLRLRLVQGKTLVFVGAVERCYRLKLFLEQFGIPACVLNSELPVQSRCHIITQF
NQGFYDYIIATDEQSLADPTAAPPTTAGRGKKKKAAGKGGKTKDKEYGVSRGVDFQNVAN
VINFDFPTTVESYIHRVGRTARADNPGTALSFISHTELGLLSEVEEALTGDHADSVLKPY
EFKMEEIEGFRYRCRDAMRSVTKQAVREARLKEIKQELLTSEKLKTYFDDNPRDLQLLRH
DKDLHPAVIKPHLRNVPEYLIPETLRGTVNPLSNRRRKRKEKPKPEGVVRSSFKKNIQGK
NPLKSFRYTGGRNRKGKAGQS
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgagaggctgcagtttcatgaaatgggcttagacgaccgtcttttaaaggcg
gttgcagatctgggttggtcccagcccactctgatccaggagaaggccatccctttggcc
ctggaggggaaagacctcctggctcgagcccggaccggatctggaaagaccgctgcttac
gctgtacctgtcatacagcgcatcctggcctccaaacagagtgtgcgtgagcaggatgtg
agagctctgatcctggtaccaaccaaagagctgggtcagcaggttcagaccatgatcaga
cagttaacggcgttctgctcgagggacgtccgagtggccgacatctccgggaaagctgac
ctgtctgcacagaggcctatcttgatggagaagcctgacgtggtcgtggggacgccgtcc
cgtgtgctcgcccacctcaacgcacagaacctggtcctgcattcgtcccttgagacgctg
gtcgtagatgaggccgacctgctcttctcctttggcttcgaggcagacctgaagaacttg
ttgtgtcatttgccgaagatctaccagtcgttcctgatgtctgcgactctcactgaggat
gttcaggccttaaaggagctgctgctacacaaccctgtgatcctgaagcttcagggctct
cagctcccagacagcagccagctgcagcagtacagcgtcaaatgtgaggaggaggacaag
ttcctgctcatctacacgctgctgaggctgcggctggttcagggcaagacgctggtgttc
gtgggagcggtggagcgatgctacagactcaaactgtttctggaacagtttggtattcct
gcctgcgtgctcaactctgagctgcccgtccagtccaggtgtcacatcatcactcagttt
aatcagggcttttacgactacatcatcgccacagacgaacagagtctggccgaccccact
gctgctccaccgacgactgcaggcagagggaagaagaagaaggccgcagggaaaggagga
aagactaaggacaaagagtatggagtctccagaggtgtggacttccaaaatgttgccaat
gtcatcaactttgatttccccacaactgtggaatcatacattcatcgagttggaagaacg
gcgagagcagacaacccaggcactgctctgtctttcatctctcacactgagctgggtttg
ctgtccgaggtggaggaggcgctcacgggagatcatgctgattctgttctgaaaccttac
gagtttaagatggaggagattgaaggcttcaggtacaggtgcagggatgcgatgcgttca
gtgaccaagcaggcggtgagggaggccagactgaaagagatcaaacaggagctgctcacc
tcagaaaaactcaagacatattttgacgataaccccagagatctgcagctgctcagacac
gacaaagacctccatcctgctgtcatcaagccccacctgaggaacgtacccgagtacctc
attcctgagacactgaggggcaccgtgaatccgctgtcaaacaggaggaggaagaggaag
gaaaaacctaaaccagaaggagtcgtcaggagcagcttcaagaagaacatccaggggaag
aacccgctgaagagtttccgatacaccggagggaggaacagaaaaggcaaagcaggccag
tcatag
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