Siniperca chuatsi (mandarin fish): 122866109
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Entry
122866109 CDS
T08948
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122866109 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122866109 (prpf4)
Spliceosome [BR:
schu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
122866109 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
NBCH_WD40
PRP4
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
Ge1_WD40
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_like
Beta-prop_WDR11_1st
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
122866109
NCBI-ProteinID:
XP_044031259
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All DBs
Position
LG18:326598..336512
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AA seq
509 aa
AA seq
DB search
MSDEEDAPPAVKKSRVFYGSLEEKERERLSSEAANSATGNDAVKAGIEAGNINISSGETL
ELEERVSERQQEALAAFERRRRARQITVSTDDAEVKAGLRALGEPITLFGEGPADRRERL
RSVLSVVGPDALKKSRRDEERAKRSQDECQQTWYHEGSASLKDARLWLAKYSLPRAMRRL
EAARAQRDVAEATRTIRQQELHKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATGSWSG
LCKLWSVPDCNLIRTLRGHNTNVGAVVFRPQAGVSLDQSDVSLASCAADGSVKLWNLESD
EPVADIEGHSERVSRVCWHPSGRFLGTTSYDNSWRLWDLEVREEILHQEGHSKGVHDLHF
HPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSLHFSPNGYHLATGSGDNTCKV
WELRNRKCLYTVPAHQNLLSAVRFQPTDGHFLLTGAYDNTAKVWSHPGWTPLKTLAGHEG
KVMSVDVSPDGKLIATSSYDRTFKLWLSE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaggaggatgcccctccggccgtgaagaagagtcgtgttttctatggaagt
ctggaggaaaaagagcgcgagcgtctgagttcagaggcagcgaacagtgcgacaggaaat
gatgcggtgaaggcggggatcgaggcgggaaacatcaacatctcatcaggagagactctg
gagctggaggagcgggtcagcgagaggcagcaggaagcactcgctgcgttcgagcggcgg
cgacgagcgcgacagatcaccgtctccaccgacgacgctgaggtgaaggctggcctcaga
gcgcttggcgagccaatcacgttgtttggagagggaccagctgaccgccgggagagactg
cgcagcgttctgtctgtcgtcggtccggatgctttgaagaagtccaggagagacgaagag
agagccaagagatcacaggacgagtgccagcagacatggtaccatgaaggctccgcctcc
ctgaaggacgctcggctctggttggccaaatactctctgccacgggcgatgaggcgtctg
gaggctgcacgcgctcagagggatgttgccgaggcaaccaggacgatccggcaacaggag
ctgcacaagagcctgaggaatctcaacaacttctgcagtcagatcggtgatgatcgacca
atcagcttctgccacttcagccccgactccaaaatgctggccaccggctcctggagtggt
ctgtgtaagctgtggtccgtcccagactgcaacctgattcgtacactcagaggacacaac
accaatgtgggcgcggtcgtcttccgcccacaggccggagtctctctcgaccaatcagat
gtcagcttggcctcgtgtgctgcagacgggtctgtgaagctgtggaacctcgagagcgac
gagccggtggcggacatcgagggtcacagcgagcgagtgtctcgagtgtgctggcatcct
tctgggaggtttctgggaacgaccagttacgataactcgtggcgtctctgggacctggag
gtccgggaggaaatcctccatcaggaaggccacagtaaaggagtccacgacctccacttt
caccctgatggatcgctggctgcgactggagggctggatgcgttcggcagggtgtgggac
cttcgaacgggacggtgcgttgttttcctggagggacacctgaaggagatctacagcctg
cacttctcccccaacgggtatcacctggcaacaggaagtggtgataacacctgtaaggtt
tgggagctgagaaacaggaagtgtctgtacacagtccccgcccaccagaacctgctgtct
gctgtccgcttccaacccacagacggtcacttcctgttgacgggagcatacgacaacaca
gcgaaggtttggagtcacccgggctggacgccactgaagacactcgccggacacgagggg
aaggtgatgtccgtcgacgtgtcacctgacgggaaactgatcgccaccagctcctacgac
cgaaccttcaaactctggctgtctgagtga
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