Siniperca chuatsi (mandarin fish): 122866372
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Entry
122866372 CDS
T08948
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04140
Autophagy - animal
schu04148
Efferocytosis
schu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122866372 (vps41)
04148 Efferocytosis
122866372 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122866372 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122866372 (vps41)
Membrane trafficking [BR:
schu04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
122866372 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
Beta-prop_RIG_2nd
Beta-prop_HPS5
zf_RING_Vps8_fungal
WD40_Prp19
Vps39_1
WD40_WDHD1_1st
Beta-prop_EML_2
TPR_7
TPR_19
TPR_PEP5_VPS11
zf_RING_Vps8
TPR_GEMI5
zf-Vps39_C
zf-RING_5
Beta-prop_IFT140_2nd
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
122866372
NCBI-ProteinID:
XP_044031895
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All DBs
Position
LG19:complement(18500080..18519684)
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AA seq
853 aa
AA seq
DB search
MAEVEEQGRKQSEEFTESEEEDSEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFHE
NFDCPIKVVALHPQFTRSNYKQFVTGGNKLLLYERNWLNRWKTSVLHEGEGSITNIQWRA
NLIAWANNVGVKIYDISTKQRITNVLRDNVSLRPDMYPCSLCWKDNATLIVGWGTSIKIC
VVKERNPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLFFVKENSDPMDEEFRAR
PRLDIIQPLPESCEEISSDALTVRNFQNNECRDYRLEHSEGESLFYIISPKDIVVAKERD
QDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMNYINHLVEKGDYDSAARKCQKV
LGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLIR
EWPGELYNNMAIVQAVTDHLKRDPTNRTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISTDRVVEELANRPELLHVYLHKL
FKRDHHKGQKYHERQIGLYAEYDRPNLLPFLRDSTHCPLEKALEVCQQRNFVEETVFLLS
RMGNSRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRVDEENICESCHATILPSDMAKPFGVVVFHCRHMFHKECLPSTGTIPGVQFCNICSAK
KRGPGSGILEMKK
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggaggagcagggcagaaaacaaagtgaggaattcacagagtctgaggag
gaggacagcgaggaggagcccaagctgaagtatgagaggctctccaatggggtgacagaa
atcctccagaaggatgctgccagctgtatgaccgtccatgacaagtttcttgccctaggt
acccattttgggaaggttttcctgctggacatccaaggaaatgtaactcagaagtttgaa
attagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtgggcatc
tgctctgaggatgggaaggttcaagtgtttggtctctatacaagagaaggcttccatgaa
aactttgactgtcccatcaaagtggtggcattacacccgcagttcaccagatcaaactac
aaacagtttgtcactgggggcaacaagctgcttctgtatgaaagaaactggttgaatcgc
tggaagacgtctgttctacatgaaggcgagggctcaatcactaatatccagtggagagct
aatctcattgcctgggccaacaatgtgggagttaaaatctatgatatcagtacaaaacag
cggatcacaaatgtgctgcgggataatgtcagtctgaggcctgacatgtacccatgcagc
ctgtgttggaaagacaatgccactctcattgttggctgggggacttccattaagatttgt
gttgtgaaagagcgaaatcctactgaaatgagagatctgcccagccgctatgtggaaata
gtgtctgcatttgagacagagtttttcatcagtggtctggccccgctggcagatcagctt
gtcaccctgttctttgtgaaggagaactctgatccaatggatgaggagtttcgtgcgcgg
cctcgtctcgacataatccagcctctccctgagagctgtgaggagatctcttcagacgcg
ctgactgtgcgtaacttccaaaacaacgagtgcagagactaccgcctcgagcattctgag
ggggagtcgctcttctacatcatcagtcccaaagacatcgttgtggccaaggagcgagac
caagatgaccatattgattggctgcttgaaaagaagaaatatgaggaggcactgatggct
gcagagatcagcttcaaaaacatcaagagacatgatgttcagaaaatcgggatgaattac
atcaaccacttagtggaaaaaggagactatgacagtgctgcaaggaagtgtcaaaaggtt
cttggaaaaaacatggaactatgggaaaatgaagtatacaggttcaagaccatcggacag
ttgaaggccatcagtcagtatttgcccagaggcgatctgcgtctcagaccagccatctat
gaaatgatcttgcatgaatttctcaaaactgattatgagggttttgccacgctgatccgg
gaatggcctggagagctttataataacatggccattgttcaggcagtcaccgatcacctg
aagagggaccccactaacagaaccttgctcaccacattggctgaactgtacacatacgac
cagcggtatgacagagctttagaaatctacctgagactgaggcacaaagatgtttaccag
ctgatccacaaacacaaccttttctcctccatagaggacaagattgtactcctcatggac
tttgacaaagagaaagctgttgacatgcttctcgacaatgaagacaagatatcgacagac
agggtggtggaagaactagcaaacaggcccgagcttctgcatgtgtacctccataaactg
ttcaagcgggaccaccacaaaggccaaaaataccacgagagacagattggcctgtatgcc
gaatatgaccggccaaatctcttacctttcctgagagatagcacacactgtccgcttgaa
aaggctctcgaggtttgtcagcagaggaactttgtagaggagactgtctttctgctcagc
aggatgggcaacagcagacgagctctgcagatgatcatggaggagctggaagatgtggac
aaggccatagagtttgccaaagagcaggatgatgcagagctctgggaggatctcatctct
tactctattgacaaaccaccattcatcactggcctccttaataacattggtactcatgtg
gatcccatcctgctcattcatcgcattaaggagggcatggagatcccaaacctccgagat
tcactagtaaaaatcctccaggactacaatctacagattcttctgagggaaggatgtaag
aagatcctggtggccgactccctctccctgctccagaagatgcaccggacacagatgaga
ggagtcagggtcgatgaggagaacatttgcgaatcgtgtcatgctacaatattaccatca
gacatggccaaacccttcggtgtggtggtgtttcactgcagacacatgtttcacaaggaa
tgtttaccatcaacaggaacaattcctggggtgcagttctgtaacatctgcagtgcaaag
aagcgtgggccaggaagtggaatcctggagatgaaaaagtaa
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