Siniperca chuatsi (mandarin fish): 122866783
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Entry
122866783 CDS
T08948
Symbol
col11a1a
Name
(RefSeq) collagen, type XI, alpha 1a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
122866783 (col11a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122866783 (col11a1a)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122866783 (col11a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
122866783
NCBI-ProteinID:
XP_044032821
LinkDB
All DBs
Position
LG19:complement(9314652..9401459)
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AA seq
1804 aa
AA seq
DB search
MEMQRWSTRWKTKRWPMDSTVTAFITLILVLQATNVRAAEPVDVLKVLEFQNYPEGVTKT
SGFCTNRRASKPDSAYRVAKQVQISAPTTQLFPGGVFPEDFSLLTTVRPKSGLQSFLLSI
YNEQGVQQLGVEVGRSPVFLYEDQTGKPAPEDYPLFRTLNLADGKWHRVAISVEKKTVTI
IVDCKKKITKQLLRSDHASINTNGITVFGTRILDEEVFQGDIQQLLIVADPKAAYDYCEH
YSPDCHTPHSDSLQAQEPEEEYTFDDLDYAQFYDYSEGTTDTIPTDEYSEPQPNNVEGDY
NTGIDYGTVDGTQTQSPFATSGPNEAVEEDAVGAYVTEATPIAPEPTTVTETVDNLDTGA
EAYDFKEYDLGEVDNRLYDYGAYDEYGTAPSEPTATYDDEVGPGVAAETDVSESTVAGAG
GVFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGTAGDPGDRGPPGRPGL
PGADGLAGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPGPMGLTGR
SGPVGLPGGPGLKGESGDPGPQGPRGIQGPPGQTGKAGKRGRAGADGARGMPGEPGSKGD
RGFDGLPGLPGEKGHRGEPGPMGPTGAPGEDGQRGEDGEIGPRGLAGESGPRGLLGPRGS
PGPPGSPGVAGVDGPPGPKGNMGPQGEPGPPGQQGIPGTQGLPGPQGPIGPPGEKGPQGR
SGLPGLPGADGPPGHPGKEGPPGEKGAQGPAGPQGPIGYPGPRGVKGADGVRGLKGSKGE
KGEDGFPGFKGDMGIKGDRGEIGMLGSRGEDGPEGPKGRAGPNGESGPIGPAGEKGKLGV
PGLPGYPGRQGPKGSSGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGARGARGPTGK
PGPKGTAGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGK
TGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGSSGK
DGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGAAGPIGLSGRPGP
QGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVGEPGQKGS
KADKGEQGPPGPSGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGSRGFPGPPGPIGL
QGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGPQGPPGGVGPMGSVGEKGEQGE
AGNPGQPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVGFPGDPGP
PGEPGVAGTDGESGEKGEDGEAGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGA
KGEAGAEGPAGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAPGQDGPPGPMGPPGL
PGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGSKGDGGIGGAAGPLGP
PGPPGLPGPQGPKGSKGSSGPAGAKGDTGVVGPPGPPGPPGEVIQPLPIQSPKKTKRSSD
MQSDAAIMDYSEGMEDIFGSLNNLKQDIERMKYPMGTQNNPARTCKDLQLCHPEFPDGEY
WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFSEFKRGKILS
YVDADGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKALRFLGANDEEM
SYDNNPYIKALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQKFGFEVGPV
CFLG
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggtccacaaggtggaaaacgaaaaggtggcctatggattccact
gtaaccgctttcatcactttaatcctggttctacaggctaccaatgtcagagcagcagag
ccagtggatgtgcttaaagtattagaatttcaaaattaccccgaaggagtgacgaaaaca
tcaggattttgcacaaaccgaagagcatcaaagccggactcagcttacagagttgccaag
caggtccagatcagtgcccccaccacacagttattccctggaggtgtgtttcctgaggac
ttctccctcctgaccacagtgcgccccaaatctggcctccagtcgttcttgctgtccatt
tacaacgagcagggagtccagcagctgggcgtggaagtgggacgctcgcctgtcttcctg
tatgaggatcagactggcaagccagccccagaggactaccctctgttccgtactctcaac
cttgctgacggaaagtggcaccgtgtggccatcagcgtggagaagaagacggtcaccatc
attgtagactgtaaaaagaagatcaccaaacagctcctcaggagtgaccatgcctccatc
aacaccaatggcattaccgtgttcggcaccaggatcctggatgaggaggttttccagggt
gacatccagcaacttctgattgtggctgatcccaaagcagcatatgactactgtgaacat
tacagcccagactgtcacactccccacagtgattccctgcaggcccaggaaccagaggaa
gagtacacttttgatgatttagattacgctcagttctatgattactctgagggaaccaca
gacaccattccaaccgatgaatattcggaaccacagccaaacaatgtagaaggagattac
aatacaggcattgactacggaactgtagatggtactcaaactcagtccccctttgccacg
agcggacccaatgaggctgtggaggaggatgctgtcggtgcatatgtcaccgaggccact
cccattgctccggagcccaccactgtcacagaaacagtggacaacttggacactggtgcg
gaagcatatgactttaaggaatatgacttgggcgaggttgacaacaggttgtatgattac
ggggcatatgatgagtatggcacagccccgtccgaacccacggcaacctacgatgatgag
gtggggcctggggttgctgccgaaaccgacgtttctgagagcaccgttgctggtgctgga
ggagtctttggccagaagggagaaaagggtgagccagctgtcattgaaccgggcatgctg
attgaaggaccaccaggaccccccggcccagctggtcttccaggtccctcaggcctacaa
ggacccccaggcactgctggagatcctggtgacaggggtcctcctggtcgtcctggtctg
cctggtgctgatggtttggcagggccccctggtacaatgctgatgctgcctttccgtttt
ggtggggatggtgagaagggtccagtggtgtcggcccaggaagcccaagcccaggccatc
ctctcccaggccagactggctatgaggggacccccagggccaatgggtttgacaggaaga
tcagggccagtgggtctacctggtggtcctggactgaaaggtgaaagtggagaccctggt
cctcagggtccccgtggcatccaagggcctccaggacaaactggcaaagctggcaagagg
ggccgtgccggagctgacggggcccgtggaatgcccggagaaccaggctcaaagggtgac
agaggctttgacggactccccggactgcctggtgaaaagggacacaggggggagccaggg
ccaatgggacccacaggtgcccctggagaggatggacagagaggcgaggatggagagatt
gggcccagaggattagctggcgagagtggtcctagaggtttgctgggacctcgtggttct
ccaggaccccctggatctcctggtgttgctggagttgacgggcctccaggtcccaaagga
aacatgggaccacaaggagaaccaggcccacccgggcagcagggaatccccggaacacag
ggtcttcctggtcctcaaggccccattggaccacctggtgaaaaaggacctcagggcagg
tcggggttgcctggattacctggagctgatgggcctcccggccatcctggtaaggagggt
ccacctggagagaaaggagcccagggtccagcaggtccacagggtcctattggttatcct
ggccctcgtggtgtcaagggtgccgatggtgtccgtggtctcaaggggtcaaagggagag
aagggcgaggatggtttcccaggtttcaagggagacatgggaatcaaaggagaccgaggt
gagattggcatgcttggatcccgtggagaggatggtcctgagggtcctaaaggccgagct
ggccccaacggggagtcaggtcccattggtcctgctggagaaaagggtaaactgggcgtt
ccaggattgccaggttatccaggaaggcaaggacctaagggctcgagcggtttccctggg
ttccctggagccaatggcgagaaaggagccaggggcattgcaggcaaacctggtccaaga
gggcaaagaggtccaacgggtcctcgtggcgctcgaggagctagaggtccaactggaaaa
ccaggtcccaagggcacagcaggcaacgacggccctccaggcccgcctggtgagagaggg
cctcaaggacctcagggaccagtgggttttcctggaccaaagggcccccctggaccagct
ggaaaggatggactgcccggacaccctggtcagcgtggagagacgggtttccaaggaaaa
actggtccaccaggcccaggaggtgttgttgggccccagggaccaactggagagaccggt
cctgttggtgagagaggccatcctggaccccctggcccacccggagagcagggtcttcca
ggtgctgctggcaaggagggagcaaagggagaccctgggccacagggatcctctggcaaa
gacggtccccctggccttcgaggctttcccggagaaagaggtctacctggcgccacgggc
ccagcaggtctgaagggaggagaggggccccaaggtccacctggtcctgttggttctcct
ggtgagagaggtcctgctggtgcagctggtccaattggcctgtctggtagacctggccct
cagggtcccccaggtcctgctggagagaagggagcgcctggtgagaaagggcctcaaggt
cctgctggtcgtgatggtgtccagggtcctgttggtctgcccgggcctgctggacctcaa
ggtccacccggagaggatggtgacaagggagaggttggagagcccggtcagaaaggaagc
aaagccgacaagggagaacagggtcctcctggcccatctggtctccaaggtcccataggt
gccccaggtcctgctggagctgatggagagcctggtccccgtggtcagcagggtatgttt
ggacagaagggagatgaaggttccagaggtttccctggaccccctggtcccatcggtctg
caggggcttcctggacctcctggtgagaagggagagaacggtgatgttggccccatgggc
cctcctggtccccctggtcccagaggtcctcagggtcctagtggagctgatggtccacaa
ggccctccaggcggagtgggccccatgggatccgtgggtgagaagggtgaacaaggtgag
gccggaaacccaggacaacctggagagcctgggactgggggtcctaaaggtgaaagagga
gagaaaggagaggctggcccccctggtgctgctggacctgctggtgccaaaggaccccct
ggagatgacggtccaaagggcaaccctggtcctgtcggattccctggagaccctggccct
cctggagagccaggtgttgctggcactgatggagaatcaggagagaagggagaggatggt
gaggctggtcagccgggacccccaggtccatcaggagaagctggcccacctggaccgcct
ggcaagagaggacctccgggggctgctggtgcagagggcagacaaggagagaagggcgct
aagggtgaggcaggtgccgagggtccagcgggtaaaacaggaccggttggaccccaggga
ccttcaggaaagcccggcccggagggtctgcgtggaatccccggccccgtcggtgaacaa
ggactgcccggcgcaccaggacaagatggtccacctggtcccatgggtcctcctggtctt
cctggtctgaaaggtgaccctgggtctaaaggtgaaaagggtcacccaggtttgattggc
ctgattggaccccctggtgagcaaggagagaagggagaccgaggtttgcccgggccccaa
ggttctcctggtagcaagggcgacggtggtataggtggagctgccggtcctctcggtccc
ccaggtccccctggtctgcctggtcctcaaggtcccaagggatccaagggttcatctggt
cctgctggtgcaaaaggagacaccggtgttgttggtcctcctggtcctcctggcccacca
ggtgaagttatccagcccttgcccatccagtcacccaagaagaccaagcgctccagtgac
atgcagtcagacgcagccatcatggactacagcgagggcatggaggacatcttcggctca
ctcaacaacctcaaacaggacattgaacgcatgaaataccccatgggcacacaaaacaac
cccgccagaacatgcaaagatctgcagctctgccacccagagttccctgatggcgaatac
tggattgatccaaaccaaggctgctctggggattccttcaaagtctactgtaacttcacc
gctgggggcgaaacctgcatctatccagataagaagtctaatggagtcagaatatcttca
tggcctaaagaagtccctgggtcatggttcagtgaatttaagcgtggtaaaatactttcc
tatgttgacgcagatggaaactcaataaacatggtacaaatgaccttcctcagactactg
acagcctcagccaggcaaaacttcacctacagctgccaccagtctgtggcatggcacgac
gccaccagcgacagctacgacaaggcgctgcgcttcctgggcgccaacgatgaggagatg
tcctatgataataacccttacatcaaggccctctcagacggatgtgcgacgagaaagggc
tatggaaagactgtgatggagattaatactcccaaaatcgatcaggttccaatcatcgat
gtcatgttgactgactttggggaccctaaccagaagtttggatttgaagttgggcccgtc
tgcttccttggctag
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integrated database retrieval system
