Siniperca chuatsi (mandarin fish): 122867135
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Entry
122867135 CDS
T08948
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03420
Nucleotide excision repair
schu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
122867135 (ercc4)
03460 Fanconi anemia pathway
122867135 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
schu03032
]
122867135 (ercc4)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122867135 (ercc4)
DNA replication proteins [BR:
schu03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
122867135 (ercc4)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
122867135 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
HHH_5
Motif
Other DBs
NCBI-GeneID:
122867135
NCBI-ProteinID:
XP_044033423
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All DBs
Position
LG20:complement(17112758..17121703)
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AA seq
898 aa
AA seq
DB search
MAGSLLEFETEMFLSLFSCDGLLVVAEGMGIDRILLQFMRVYSEQGSLVLLLNTTAPEQE
YFTEQLRVEGVTHLPRTVTSDVQSTERYNVYTEGGVLFVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATAFSLGFCQVERVMRNLFVKKL
YLWPRFQASVNTALDRHKPEVVELHVSLTPAMRAIQSSILDIMSACLKELKRYNPTLEAE
DLSLENTLGNAFDKTIRHYLDPLWHQLGAKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKIFGSNSGWLFLDSSTSMFVNARGRVYRIPESKKKLKVGAEAEKQISSSALEV
KRELVLEKSPKWEALTEVLQEIERENKSSQHVPGRVLICASDDRTCAQLQQYIRHGSDWL
LNRLYARTIGKRDSAAAAAFELDSHKKGNGWPKKGAKGKEPAQKKNTKSAKSKKRLSLTL
TQMVGKEETDEAAVMGSSGDEDDLMEEEGEEEQLKLDLSSDAYYGVLKEPLTVIHPLKGL
TDPHSLTRVLHEVEPSFVVLYDAELSFVRQLEIYKASRPGKPLRVYFLIYGGSTEEQKYL
TALSKEKKAFEHLIREKATMVIPEEREGREDTNLDLARNLEPANSTTNTRKAGGQEQPKE
PSRVIVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSISDLIGSLQSGR
LYTQCLSMTRYYRKPVLLIEFDPAKPFSLIARSDFRHEISSNDISSKLTLLTLHFPRLRI
LWCPSPHATADLFLDLKQGRSEPDAAAAQAVTAESDMVAESADLYNPGPYDFLLKMPGVN
TKNYRALIKNADSLADLARLSQDKLAEILENANSAKLLYEFLHNVADVPAPAQKAKLT
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggcggggtcgctgctggagtttgagactgagatgtttttgagtctgttcagctgtgac
gggctgctggtggtggcggaggggatggggatagaccgcatcctgctgcagtttatgcgg
gtttactcggagcagggaagcctggtcctgctgctcaacacaaccgcgcctgaacaggag
tatttcacggagcagttgcgagtggagggtgtgacccacctgcccaggacagtcaccagc
gatgtccagagcactgagcgctataatgtttacacggagggaggagtgctgtttgtcacc
agcagaatcctggtggttgacttcctcactgaccgcattcctgctcatctcatatcaggc
atcctggtgtaccgtgctcataaaatcattgagtcgtgtcaggaggccttcatccttcgt
ctgtttagacaaaagaacaagacaggcttcattaaggccttcactgacaaggccacggcc
ttctccttgggcttctgccaggtggaacgtgtgatgaggaacctcttcgtcaagaagctc
tacctgtggcccaggtttcaagcatcagtaaacacagcactggacaggcacaagccggag
gtggtggagctccatgtgtcattgacgccggctatgagggccatccagagctccatcctg
gatatcatgagtgcctgtctgaaggagctgaaacgctacaaccccaccctggaggctgag
gacctctccctggagaacacactaggcaatgcctttgacaagaccatccgtcactacctg
gaccccttgtggcaccagctgggagcaaagaccaaggccctggtccaggacctgaaagtg
ctgagggttctcctgctctacctcacccaatacgattgtgtgaccttcctcaatctgcta
gagtcgctgcgctccagccaaaagatctttggatccaattcagggtggttgttcctcgac
tccagtacctccatgtttgtgaatgccaggggtagagtgtaccgcatccctgagagcaag
aagaaactcaaagtgggagcagaggcagagaaacagatatcatcctctgccttagaggtg
aagcgggaactggtgctggagaagagcccaaagtgggaggctctgactgaggtactgcag
gagattgagagggagaacaagagctctcaacatgtaccaggtcgtgtgctgatctgtgcc
agtgatgacaggacttgtgcccagctgcaacagtacatcaggcacggctctgactggctg
cttaatcgactgtatgcccgcacaatcggtaaacgggactctgctgcagccgctgccttt
gaacttgactcgcacaaaaagggcaatggctggcctaaaaaaggagccaaggggaaggag
cctgcacagaaaaaaaacacaaagtccgcgaagagtaaaaaaaggctatccctgaccctg
acccagatggtggggaaggaggagacagatgaagcagcggtgatgggcagcagtggagat
gaggatgacctgatggaggaggaaggggaggaagaacagctgaagctggatttgtcatcg
gatgcctactatggtgtcctaaaagagccactgactgtcattcacccactgaaaggcctc
accgacccccacagcttgacgcgggtgctgcatgaggtggagcccagtttcgtggtgctt
tacgacgctgaactcagtttcgtccgccagctggagatctacaaagctagccggcctgga
aagcctcttagggtgtatttcctcatctatggaggctcgacagaagaacagaagtacctg
acggcgctgtctaaggaaaagaaagcctttgaacacctgatcagggaaaaggctactatg
gtcatcccagaggagagggaggggcgagaagacaccaacctggaccttgctagaaattta
gagcccgccaattccaccaccaacacccgcaaagccggaggccaggagcagcccaaagag
ccctcacgagtcattgtggacatgcgtgagttccgcagcgaactgccctccttgctgcac
cgccgtgggctggacatcgagcctgtcaccctagaagtcggtgactacatcctgacccca
gacacatgcgtcgagcgcaagagcatcagtgatctgattggctcgttgcagagcggccgc
ctctacacccagtgtctctccatgacccgctactacaggaaaccagtgcttctcattgag
tttgacccagcaaaaccgttttccttaatagcccgatcagatttccgtcatgagatatcg
tctaatgatatttcttcaaaactcaccttactcaccttgcatttcccccggctccgtata
ctctggtgcccctccccacacgccacagctgacctcttcctggatctaaagcaaggtcgc
tctgaacccgatgcagcagcagctcaggcagtcacagccgagtcagacatggtggcagaa
tcagcagacctttacaaccccggaccttatgactttctgttgaaaatgcctggggtcaat
acaaaaaactatagggctcttataaaaaatgccgacagcctggcagatttagccagactc
agccaggacaagctagcagaaatactcgagaatgctaacagcgctaagttgctgtatgag
tttctgcataatgttgctgatgtccctgctcctgcgcagaaggccaaactgacatga
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