Siniperca chuatsi (mandarin fish): 122867174
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Entry
122867174 CDS
T08948
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122867174 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122867174 (smarcc2)
03036 Chromosome and associated proteins [BR:
schu03036
]
122867174 (smarcc2)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122867174 (smarcc2)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122867174 (smarcc2)
PBAF complex
122867174 (smarcc2)
GBAF(ncBAF) complex
122867174 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
122867174
NCBI-ProteinID:
XP_044033544
LinkDB
All DBs
Position
LG2:complement(19228499..19240714)
Genome browser
AA seq
1066 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLTRPVIFLSPDIEPKLLGKLKDIIKRHQGSVTEDKASSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPASEEGNPAKTN
NTKKDSDSTPVKGGTDMDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQQMISFPDKVKEKPADLQNFGLRTDMYSKKSGSVKSKSTASSMREWTEQ
ETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDNSSSMGPLAYQPI
PFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGDRPDESSDESKSDSQSGEEKREAKESKDGAVEEEEK
QAENGKKEEERGREQEGEREADKTESEMGDGEKEKDGKEGTEEGQREAESEGEKKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQAGGPHSNQAA
SGPPPQGPTATQQTPSTPAPQPAPSPVPPASSAPAPESQPPQGAHASPPCPPGQAPAAHS
SSSSSTTPVLHGLCQKVSENSEKSQDPTAPLPGETLHPSAPVPPPQ
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaggcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtctctgtccagcctggtggtccagctgcttcagttccag
gaggaggtgtttggtcggcatgtcagcaaccctccgctcaccaagctgccaatgaaatgt
tttctggacttcaagtcaggaggggctctctgccacatcctggctgctgcctacaagttt
aagagtgaccaaggatggcgcaggtttgacttccagaatccgtcgaggatggaccgaaat
gtggagatgttcatgacaattgagaagtccttagtgcagaacaactgcctaacaagacct
gtcatcttcctgagccctgacatagagccaaaactgctcgggaaactgaaagacatcatc
aaaaggcatcagggctcagtaactgaggacaaggcctccagctcccatgttgttgttcct
attcccaccagcctggaggaagaggagtgggtacgtccggtgatgaagagagataagcaa
gtgctgctccactggggatattttcctgacagttatgatacctggatcccagccagtgag
attgaggctgctgtggaagatcctcccagcccagaaaaacccaggaaggttcatgccaag
tggattttagacctggaccagtataacgaatggatgaatgaggaggactatgaagtgggc
gagggctgccccaagaggaagaggatctcagccaagacccttacagatgaggtgaccacg
cctgacgagcggcgggacaagaagcctggcagcgccaagaagaggaagcgctcgccgtcg
ccctcccccacgcctccacctcaggagagcaagaagaagaacaccaaaaaagggccgact
accccgtacaccaagtctaaacggggccagagggaggaggaacaggaggatcttagtaag
gacttggatgaagcgtcacctgttccagcatctgaagagggaaacccagctaagacaaat
aacaccaagaaggactctgattcaaccccagtaaagggaggaacagatatggacgagcaa
gaggatgagtccatggaaacaacaggcaaggaggaggaggaaggctctccgagtgtgaag
ggtgaaccagtgaaaggctcggaccttcacgaggacaatgtgactgagcaaacccaccac
attattataccgagctacgctgcctggtttgactacaacagtgttcatgccattgagcgc
agagccctgccagagttcttcaatgggaagaacaaatccaaaacccctgagatttacttg
gcgtacaggaacttcatgattgacacctaccgactcaaccctcaggagtacctgacctcc
actgcctgccgcaggaacctggcaggagacgtgtgtgcaatcatgagagtccacgccttc
ctggagcagtggggtctgatcaactatcaggtggactcagagagtcggcccacacccatg
ggtcccccacccacctcccacttccatgtcctggcagacactccatccagtctggtgccc
ctgcagcccaagacgtcccagacccctgctacccagcagatgatatccttcccagataaa
gtgaaggagaaaccagcagatctgcaaaacttcgggctgcggaccgacatgtacagcaag
aagagtggctctgtaaagagcaagagtacagcaagctctatgagggagtggacagaacaa
gaaacactactactacttgagggcttggagatgtacaaggacgactggaacaaggtttca
gaacacgtgggcagccgtacgcaggatgagtgcatcctgcatttcctgcggctgcccatc
gaagacccttacttggaggacaactcctcgtccatgggaccactggcctaccagccgata
cctttcagccaagcaggaaaccccgtcatgagcacagtggctttcctcgcctctgtcgtc
gacccgcgtgtggcctcagctgcagccaagtctgctctggaggagttttctcgtatgaag
gaggaggttcctgcagcgcttgttgaggctcatgtgcggcgggtggaggaggcagcgagg
gtcagtggccgacaggacccgctgtatggcctggaaggtagtggcatcgcaggcaccggc
ctggaggagggagacagacctgatgaaagcagtgatgaaagtaagagtgacagccaatca
ggtgaagagaagagggaggccaaggagagcaaagatggagcggtggaggaagaggagaag
caggcggagaatgggaagaaggaagaagaaagaggaagagaacaagaaggagagagggag
gcggacaaaacagagtcagagatgggcgatggggagaaagagaaggatgggaaagagggc
acagaggagggacaaagagaggcagagagtgaaggagaaaagaaagctaaggtggagcgt
gatgtgggagaggggaatctggccactgctgctgcgtctgcactcgctgctgctgctgtc
aaagccaagcacttggctgcagtggaagagaggaagatcaaatctcttgtggctctgctg
gtggagacccaaatgaagaagctggagattaaactgcgacactttgaggaactggaaacc
atcatggacagagagagggaggctttggagtaccagcgtcagcagctgctggctgaccgt
cagtccttccacatggagcagttgaaatacgctgagatgagggcccgccagcagcacttc
cagcagattcagcaccagcagcacagccaggctgggggccctcattccaaccaggccgcc
tcaggcccgccaccccagggcccgaccgcaactcagcaaactcccagcacaccagcgccg
cagccggcccccagccccgtgcctccagcctcttctgccccggctcctgagtcccaacca
cctcagggtgctcacgcctcacccccctgccccccaggccaagccccagctgcccactcc
agctccagctccagcactactcctgtactccatggattgtgtcagaaagtgtcagaaaat
agtgaaaaatcccaagatcccaccgcccctcttcccggggaaacactccacccctcagct
ccagtcccgcctccacagtga
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