Siniperca chuatsi (mandarin fish): 122867498
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Entry
122867498 CDS
T08948
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
schu03016
]
122867498 (trub1)
Enzymes [BR:
schu01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
122867498 (trub1)
Transfer RNA biogenesis [BR:
schu03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
122867498 (trub1)
Prokaryotic type
122867498 (trub1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Pus10_C
Motif
Other DBs
NCBI-GeneID:
122867498
NCBI-ProteinID:
XP_044034284
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Position
LG20:25486361..25501685
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AA seq
293 aa
AA seq
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MAGNISSSAVPITSSLSKLQSLNGLFAIYKKQGPTSADVLNTVKEALLKEAGVQTPTPRK
RKKQSLKMGHGGTLDSAASGVLVVGVGNGTKMLSTMLAGSKKYVAVGELGKATDTLDATG
SVILEKDFEHITRLDIEDKLKAFTGNIMQVPPLYSALKRDGQRLSVLLKKGHKVEAKPAR
PVTVYNLTLQEFKPPLFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELIRTKQGQFTLE
EHALHEEQWTLEQILLSLWPCRESRMSEQGVDCTKPPEADTLETHTEQDPKGK
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaaacataagtagcagtgcggttccgataactagttctttgtctaaactacag
tctttaaatggattgtttgcaatatataaaaaacaagggccgacatctgcagacgtgtta
aataccgtcaaagaagctttactcaaggaagctggagtgcaaacccccactccgcgaaag
aggaagaagcagagcctgaagatggggcacggagggacgctggacagcgctgccagtggg
gtgttagttgttggtgttgggaatggcacaaagatgctcagtacaatgttggctggttct
aagaaatatgttgctgtgggggaactggggaaagcaacagatactcttgatgccactggc
agtgttattctggagaaagactttgaacacataaccaggttggacattgaggacaagctg
aaagctttcactggtaacatcatgcaagttcctccactctactcagcactgaaaagagac
ggccaacgtctgtctgtcctgctgaagaaaggtcacaaggttgaggccaaaccagccaga
ccagtcactgtgtacaacctgaccctgcaagagttcaaaccgcctctcttcactctggat
attgagtgtggtggtggattttatgtcagaagcttggtggatgacctgggaaaagcgctg
tcatcatgtgctcatgtgaaggaactgatccggaccaagcagggtcagttcaccctggag
gagcatgccttacatgaggagcagtggacactggagcaaatcctgctctctctgtggccc
tgcagagagagcaggatgtcagagcagggtgtggactgcacaaaaccaccagaagccgac
accttagaaacacacactgaacaggacccaaagggaaagtga
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