Siniperca chuatsi (mandarin fish): 122867638
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Entry
122867638 CDS
T08948
Symbol
msh2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122867638 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schu03400
]
122867638 (msh2)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
122867638 (msh2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
AAA_27
Motif
Other DBs
NCBI-GeneID:
122867638
NCBI-ProteinID:
XP_044034600
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Position
LG20:8328147..8343630
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AA seq
935 aa
AA seq
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MAVQPKQNLSMDSAAEHGFLNFIFSMPEKPDTTFRIFDRNDYYTVHGKDAIFAAREVFKT
NGVIKYLGSGSRKLESVVLSKLNFEAFVKDLLLVRQYRVEVYKNHSKSSKEHEWKIEYKA
SPGNLTQFEEILFGGGTGAEGCAGVVAVRFGTGADGQRVVGVGYVDAAQRTMGVCEFPDN
EIFSNLESLLVQISPKECLLAQGEGNTDGNKLREVVQRGGVLVSDRKRAEFSSKDMVQDL
NRLLRAKRGETVASNTLPELDKQVAMSCLAAVVRFLELLSDESNFNSFSLTTLDLGQYMR
LDNAAVRALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTKIEERLD
LVESFVCDSELRQTCQEDLLRRFPDLHRLAKKFHRHTATLQDCYRVFQAVTHIPALITSL
ERYSGSYQVLLEAVFLSPLRDLQTDFCKYQEMIETTLDMNQIDHHEFLVKASFDPVLSEL
REKMDMLEKSMQAVLNSAARELGLDAGKTVKLESNAMLGFYLRVTCKEEKSLRNNKKFTT
LDVQKNGVRFTNSKLSSLNEEYTKNREEYEEAQNAIVKEIINIASGYVDPLQTLSDVIAQ
LDAVVSFAVASVSAPVPYVRPQLLADDCRRMELQQARHPCMETDADTAFIPNDITFIQGE
KSFYIITGPNMGGKSTFIRQVGVIALMAQIGCFVPCEKAELSVIDSVLARVGAGDSQVKG
VSTFMSEMLETAAILRSATGNSLIIIDELGRGTSTYDGFGLAWAISEHIASNIGCFCLFA
THFHELTALATQQPSVHNLHVTALTSHNTLTMLYRVKPGVCDQSFGIHVAELACFPPSVV
AMAKEKAEELEEFQEPAGEKSEQEEEPEAKRRRTDKQVGENLIQDFLEKAKSLSVATMSE
EEVKAALRRMKQELVVKNNTYITEILARCAPAKTA
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacagaacctgtctatggacagtgcagccgagcacggctttcta
aacttcattttctcaatgccggagaaaccggacactactttcaggatattcgaccgtaac
gactactacactgttcacggaaaagacgccatattcgcggctagggaagttttcaagacg
aatggggtcatcaaatatttaggctcagggagtcgcaagctggagagtgtggtccttagc
aagctgaactttgaggcctttgtgaaagacttgctgctggtgaggcagtacagagtagaa
gtgtacaagaaccacagcaagagcagcaaggagcacgagtggaagatcgagtacaaggcg
tctcccggaaacttgactcagtttgaggagattctgtttggtggtggaaccggagcggag
ggttgtgcaggagttgtagccgtgcggtttggtacaggagctgacggacagcgcgtggtc
ggggtcggctatgttgatgcagcccagaggacgatgggagtgtgtgagtttccagacaac
gagatcttctccaacctggagtccctgcttgtccaaatcagccccaaagagtgtctctta
gcccagggtgaaggcaacacagacggcaataaactacgagaggtggtacagcgtggtggc
gtactggtctctgacaggaagagagcagaatttagtagcaaggacatggtccaggatctc
aacaggctgctgagggccaagagaggagagactgtggcgagcaacacgctacctgagctg
gacaaacaggtggctatgtcgtgcctggctgcagtggtgcgtttccttgaattgctgtct
gatgagtccaacttcaactccttcagtctgaccactctggacctgggtcagtacatgagg
ctggacaatgctgccgtgagggctcttaacctcttccagggatcacctgacgacaccagt
ggagctcattcattggccggtctgttgaacaagtgccgtacaccacagggacagcggctg
gtcaaccaatggatcaaacaaccactcatggacaaaacaaaaatagaggagaggctggac
ctggtggagagctttgtgtgtgactctgagcttaggcagacctgtcaggaggacttactg
cggcggtttcctgatcttcaccgtctggccaagaagttccaccgtcacactgcgacgctg
caggactgctaccgtgtcttccaggctgtgacccacatccctgccctcatcacatccttg
gagagatactcaggtagctaccaggttctgttggaggcggtgttcctgtctcctctcaga
gacctgcagaccgacttttgtaaataccaggagatgattgaaacgactctggacatgaac
cagattgaccaccatgagttccttgtgaaggcgtcgtttgatccagtgttgagtgagctg
agagaaaagatggacatgctggaaaagagcatgcaggcagtgctgaacagtgcagccaga
gaactagggctggatgctggtaagacggtgaagctggagtcaaatgccatgctcggtttt
tacctgagagtcacctgcaaggaggagaaaagtctgaggaacaacaaaaaattcaccacg
ctggatgttcagaagaacggcgtgcgcttcacaaacagtaagctgagctctctaaacgag
gagtacaccaagaacagggaggagtatgaggaggcccagaatgccatcgtcaaagagatc
atcaacatcgcctcaggttacgtggatcccctccagacgctaagcgacgtgatagcgcag
ctggatgcagtggtgagttttgccgtggcgtccgtctctgctcctgtgccgtatgttcgg
ccccagctgttggcggacgactgcaggcgtatggagctgcagcaggccagacatccctgc
atggagacggacgcagacaccgccttcatacccaacgacatcaccttcatccagggagag
aagagcttctatattataacaggaccaaatatgggcggcaagtcgacgtttatccggcag
gtgggtgtgatcgcgctgatggctcagatcggctgctttgtgccatgcgagaaggcggag
cttagcgtgattgacagcgtcctggccagggtgggagcaggagacagccaggtcaaagga
gtgtccacttttatgtcggagatgctggagacagctgccattctacgctcggccacgggg
aactcgctcatcataatcgacgagctcggcagaggcacgtccacatacgatggcttcggt
ctggcctgggccatcagcgagcacatcgcctccaacatcggctgcttctgtctgtttgcc
actcacttccacgagctgacggcgctggcaacacagcagccctccgttcacaacctgcat
gtcacagccctgacctcccacaacacactcacgatgctgtacagagtcaaaccaggtgtg
tgtgaccagagttttggaatccacgttgccgagttggcttgcttcccgccatcggtggtt
gccatggcgaaggagaaggcggaggagctggaggagttccaggaacctgcaggagagaag
tcagagcaggaggaagagcctgaggccaagagacgacggacagacaaacaagtgggggaa
aacctgatccaggacttcctggagaaagcgaagtcactctctgttgccaccatgagtgaa
gaagaggtaaaggcggcgctcaggagaatgaagcaggaacttgttgtcaaaaataacacg
tacatcacagagatccttgcacgctgtgctcctgcaaaaacagcttga
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