Siniperca chuatsi (mandarin fish): 122867764
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Entry
122867764 CDS
T08948
Symbol
pms2
Name
(RefSeq) mismatch repair endonuclease PMS2 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03430
Mismatch repair
schu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
122867764 (pms2)
03460 Fanconi anemia pathway
122867764 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schu03400
]
122867764 (pms2)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
122867764 (pms2)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
122867764
NCBI-ProteinID:
XP_044034889
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Position
LG20:16297745..16308463
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AA seq
862 aa
AA seq
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MSLDGHDSTAVTSEPAGAIKAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATNIDV
RLKECGAELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIHVETFGFRGEALSSLCA
LSNLSVVTCHESSQVGTKLVFDHKGHLVQQSPHPRQQGSTVSLQQLFYTLPVRHKEFQRN
IKKEYAKMIHILQSYCIISTGVRITCSNQNGQGKRSTVLSTSGSQCMRDNIGAIYGPKQL
QSLLPFQQVSPTEDVLEEYGLKDADLPKQLFSITGFVSRGDHGVGRSATDRQFFFINNRP
CDPIKVTKLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLLAILK
TSLINMYEAGVNKISLNYTSIPSTNTTPASEICQVVSPNENMPEPGEEPVTQSPKLSLNL
AGLKAAFSSHHSSNSGNKSSIAKAANSGPTQKTLQSFFKDTVKPPTCNPSAKSPLKPTRD
LAKYSPVGKSVLDGFRYGKTLCSDTDSEKDSAVFTCDLATADFQCSGLEFSSPGPASVKN
ETLEETSDYTVPKDPELQTEPCTSNEDCAVSPDAKRTRTERPHFPTEHKSNTFSNCFENS
SLTVDAAVCIQRRMVPLHFSLQELAGKVKRLQDQRKQRAGEDLRYRRFRAKINPGENQSA
EEELKKEISKDMFKQMEIIGQFNLGFIITKLNSDIFMIDQHATDEKYNFEMLQQHTALQG
QKLIVPQKLHLTAISENVLIENIEIFRKNGFEFLVDEDAQVMERVKLVSLPTSKNWTFGP
ADIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGTALSVSEMKKLLVHMGEIEHP
WNCPHGRPTMRHLANLDIISQD
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgtcactagacggccatgattcaacggcagtaacctctgaacctgccggagccatcaag
gccattgacaagcactcagtgcatcagatctgctcaggacaggtggtgctgactttggcc
actgcagtcaaagagctggtggaaaacagcatcgatgcaggggccaccaacattgatgtc
aggctgaaggagtgtggagctgaactagtggaagtgtcagacaatggcaaaggagtagaa
gaggccaactttgaaggactgacattgaagcatcacacgtcaaaactgagggatttctct
gatctcatccatgtggaaacatttggcttcagaggtgaagccctcagctctttatgtgct
ctgagtaacctgagtgtggtgacatgccacgagtccagccaggtggggaccaagctggtg
tttgaccacaaaggccacctagtgcagcagtcaccccatccccggcagcagggctccaca
gtcagcctgcagcagctcttctacaccctgcctgttcggcataaggagttccagcgcaat
attaagaaggagtatgccaaaatgatacatatcctgcagtcctactgtatcatctctaca
ggagtgcgtatcacctgctccaaccaaaatggccagggaaagcgcagcacagtcctcagc
accagtggcagccagtgtatgagagacaacataggggccatatatggaccaaaacagcta
cagagtcttctgccttttcagcaagtttctcctacagaagatgttcttgaagaatatgga
ctcaaagatgcagacctacccaaacagcttttttccatcacagggtttgtgtcacgagga
gaccatggcgttgggagaagtgccacagacaggcagttctttttcattaacaaccggcca
tgtgatcccattaaggtgaccaaacttgtgaatgaagtttatcatatgtacaacagacat
caatatccatttgttgcattgaacatagctgttgcctctgagtgtgtggatgtgaacgta
acgccagacaaacgacagattttccttcaggaggagaaactcttgctggctattctgaag
acctctcttatcaacatgtatgaggctggagtcaataagatcagcctgaattatacgtcc
atacccagcaccaatacaacgcctgcatccgaaatctgtcaggttgtctcgcctaatgag
aacatgccagaacctggagaggaaccagtgactcagagcccaaagttgtccctaaacctg
gccggcctaaaagcagctttttcaagtcatcacagctccaattctgggaacaagtcaagt
attgcaaaagctgcaaacagtggcccaacacagaaaacactgcagtctttttttaaggac
actgtcaaacctcctacctgcaacccaagtgcaaaatctcctttgaaacccacaagagat
ctagctaaatactccccagtgggaaagtcagtgctagatgggttcaggtacggaaagacg
ttatgcagtgatacagactcagaaaaagacagtgctgtgttcacttgtgacttggcaaca
gcagattttcagtgttctggcctggagttcagttctcctggacctgccagtgtaaaaaat
gaaacactcgaagaaacatcagactatactgttcccaaagacccagagttacagactgag
ccatgcacttccaatgaggactgtgctgtgagcccagatgccaagaggaccaggacagag
agaccacatttccccacagaacacaaatctaacactttttcaaactgttttgagaattcc
tccttgacagtggacgctgcagtctgcatacagaggaggatggtgcctctccatttctct
ctacaagagctggcagggaaggtgaagaggttgcaggaccagcggaaacagagggccggt
gaggatctgcgctatcgacgcttcagggccaagatcaaccctggagaaaaccaaagtgca
gaggaagagctcaagaaagaaatcagtaaagacatgttcaaacagatggagatcatcggt
cagtttaacctgggcttcattatcaccaaactcaactcggacatcttcatgattgaccag
catgccacagatgagaaatacaactttgagatgctgcagcagcacactgcgctccaagga
cagaaactcatagtccctcagaagcttcacctcactgctatcagtgaaaatgtactcata
gagaacattgagattttcagaaagaatggctttgaattccttgtcgatgaggacgctcag
gtgatggagagggttaaactggtgtctctgcccaccagtaaaaactggacatttggccca
gccgacattgaagagctgatcttcatgttgagtgacagcccaggggtcatgtgtcgacca
tcccgcgtcaggcagatgtttgcctcccgagcctgtagaaaatctgtgatgattggcact
gctctgagtgtcagtgagatgaagaagctcctggttcacatgggggagattgagcatcca
tggaactgtcctcacggcagacccaccatgagacacctcgccaacctggacatcatctca
caagactga
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