Siniperca chuatsi (mandarin fish): 122868069
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Entry
122868069 CDS
T08948
Symbol
rnf40
Name
(RefSeq) E3 ubiquitin-protein ligase BRE1B isoform X1
KO
K10696
E3 ubiquitin-protein ligase BRE1 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122868069 (rnf40)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122868069 (rnf40)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
BRE1 proteins
122868069 (rnf40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRE1B
CC_Bre1
zf-C3HC4
BRE1
zf-C3HC4_3
zf-C3HC4_2
ADIP
zf-RING_UBOX
zf-RING_2
zf-RING_5
OVT1
zf-rbx1
SpoIIE
Motif
Other DBs
NCBI-GeneID:
122868069
NCBI-ProteinID:
XP_044035568
LinkDB
All DBs
Position
LG20:15152094..15165733
Genome browser
AA seq
1004 aa
AA seq
DB search
MSGAGGGKRPSGGDSPPGPPEKKSKKEEKTTTTLIEPIRIAGVSSTEEMDMKVLQFKNKK
LCERLEQRQTMEDELREKIEKLEKRQATDDTTLLIVNRYWSQLEENVHVLRRRIEPEAPV
TSTPAPPSAPLPDPTPMEEDGVNQASPTSAVPPPPLPEAQNEGEQAEQQEEQQEERQEEQ
QQPSPPTASEELLTPKEPPQDSTTDASPPPPPLSENAKGFLATLEHSSEEELTLHLQDRM
QFSKEAIACLVCVFDRLHSRIDNMCKQVQAAACEDDSQSDIINVNHTLLEENSRLRDMAT
LLQGRHHKMSMEYNELVDKVTSSETKVSEMETTVEDLQWDIEKLRNREQKLNKHLAEAME
QLKSGYSSTGSSGGLPGGQITLNIQKFESLNAELEHNQELANSRMAELEKLQVELQEAVR
ESEKLKMDLRNIPEEVVKETLEYKCLQSQFSLLYNESLGVKTQLDEARALLLTAKNAHLR
QIEHMESDELSLQKKLRTEVIQLEDTLAQVRKEYEMLRIEFEQNLAANEQAGPINREMRH
LISSLQNHNLQLKGDVQRYKRKLRETQMEINKLRCQSGDSGVLILEETTSDSIDVKKEED
EDQEEEEERRKELERQRAREREREAERERERERERERQRSDELKRKDSDTLKMLRVELKK
AQESQKEMKLLLDMYKSAPKEQRDKVQLMAAERKSKAEVCSLVDELRMRVRELEERERKE
SKKLADEDALRKIRVAEETIEHLQKKLAATKQEEEALLSEMDVTGQAFEDMQEQNSRLLQ
QLREKDDANFKLMSERIKSNQIYKLLKEEKEELADQVLTFKTQVDAQLLVVQKLEEKEGV
LQSTLAALEKELSVRTQALELNKRKAVEAAQLAEDLKVQLEHTQAKLKEIQVSVAENRTA
RERESSNLKRAQEDLSRLRRKLEKQKKVEVYSDADEILQEEINQYKAKLRCPCCNTRDKE
TVLTKCFHVFCYECLKMRYDTRQRKCPKCNCAFGANDFHRIYIT
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtgctgggggaggaaaacgtccctcaggaggggacagcccccctggcccacct
gagaagaaaagcaaaaaagaggagaaaaccaccaccactctcattgagcccatacgtata
gctggagtctcctctacggaggaaatggacatgaaggtcctccagtttaagaataagaag
ctgtgtgagcgcttggagcagagacagacgatggaggatgagttacgagagaaaattgag
aaactggagaagagacaagccacagatgacaccaccctgctgattgtcaaccgctactgg
tcgcagttggaagagaatgtgcacgttctccgcagacgtattgagccagaagctccggtg
acatctacccctgccccaccctcagcccctctccctgaccccacaccaatggaagaagat
ggtgtcaatcaggcctcaccaacttctgccgtgcctccacctccactcccagaggcccag
aatgagggggagcaggcagaacagcaggaggagcagcaggaagagcgtcaggaggaacag
cagcagccctctcctcccactgcgtcagaagagttgttgacacccaaagagccaccacag
gactcaacaacagatgcatcaccgccccctcctcccctaagtgagaatgccaagggtttc
ctagccacgctggagcacagcagcgaggaggaactaaccctgcacctccaggaccgcatg
cagttcagcaaggaagccatcgcctgcttggtctgcgtctttgacaggctgcatagccgc
attgacaacatgtgcaagcaggtccaggctgcagcatgtgaggacgatagccagtctgac
attatcaatgtgaaccacactctgctggaggagaacagtcgactgagagacatggccact
ctcctgcaaggccgacaccacaagatgtccatggagtacaatgagttagtggacaaggtg
accagctctgagaccaaggtgtctgagatggagacaacggtggaggacctgcagtgggac
attgaaaaactccgcaatagagaacaaaagctcaacaaacacctggcagaggccatggag
cagctaaagtctggatacagcagcaccggcagctcaggcggactacctggaggccagatt
acactgaacattcagaagtttgagagtctcaatgcagagttggagcacaatcaggagttg
gctaatagccgtatggcagagttggagaaattgcaggtggagctccaggaggctgtgagg
gagagtgagaagctcaagatggacttgcggaatattccagaagaggttgtgaaggagact
ctagaatacaaatgtctgcagtcccaattctccctgctgtacaatgagtctcttggtgtg
aaaacccagctggatgaggcacgggccctcctgctcactgccaagaacgcccatctccga
cagattgagcacatggagagtgatgagctgtcccttcagaagaagctgcggactgaggtc
atccagctggaggataccctggcccaggtgcgcaaagagtatgagatgctgcgcatcgag
tttgagcagaacttggcggccaacgagcaagcaggaccaatcaacagggagatgcgacac
ttaatcagcagccttcagaaccacaacctgcagttgaaaggtgatgtgcagcgctataag
aggaagttacgggaaacacagatggagatcaataagttgcgttgtcagagtggcgactct
ggtgttctgattctagaggaaacaacgagtgacagcatcgatgtgaagaaagaagaggat
gaggaccaggaggaggaggaggagaggaggaaggaactggagagacagcgggcccgagag
agggagagggaggctgagcgagaacgagagagggaacgtgagagagagaggcagcgcagc
gacgagctgaagaggaaggactcggacacactgaagatgctcagagtagaactcaagaaa
gcccaggagtcccagaaagagatgaagctcttgttggacatgtataagtctgctccaaag
gagcagagggacaaagtgcagctcatggcagctgaacgcaaatcaaaagctgaggtttgt
tctttggtggatgagttgaggatgcgagtgcgagagctggaggagagggagaggaaggaa
agcaagaagctggctgatgaagatgccctcaggaagatccgagtggcagaagagaccatt
gagcatctgcagaagaaacttgctgccactaagcaggaggaggaagccctgctgagcgag
atggatgtaaccggccaggccttcgaggacatgcaggagcagaacagccggctgttgcag
cagttacgggagaaggatgatgccaatttcaagctgatgagtgagcgaatcaaatctaac
cagatctacaagctgctgaaagaggagaaggaggagttggccgaccaagtcctcacattc
aaaacccaggtggatgcccagctgctggttgtgcagaagcttgaagaaaaagagggcgtc
ctccagagcacacttgccgctctggaaaaagagctgtctgtccggacacaagcactagaa
ctcaacaagaggaaggcggtggaggctgcccagctggcagaggacctgaaggtgcagctg
gagcacacgcaggccaagctcaaggagatccaggtctctgtggctgagaaccgcaccgcc
cgggagagggagagcagcaacctgaaacgagcacaggaggatctgtcaaggctgagacgg
aagctggagaagcagaagaaggtggaggtgtactctgatgctgatgagattctgcaggag
gagatcaaccaatacaaggccaagctgcgctgcccctgctgcaacacacgagacaaggag
acggtgctcaccaagtgtttccacgtattctgctacgaatgtctgaagatgcgttacgac
acccggcagaggaagtgccccaagtgcaactgcgcctttggagccaacgactttcaccgc
atctacatcacctaa
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