Siniperca chuatsi (mandarin fish): 122868528
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Entry
122868528 CDS
T08948
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04120
Ubiquitin mediated proteolysis
schu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122868528 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
122868528 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122868528 (mgrn1b)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122868528 (mgrn1b)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122868528 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
122868528
NCBI-ProteinID:
XP_044036487
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Position
LG21:9179950..9189306
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AA seq
552 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDDSDTPMEDGGKPKVQYGV
EFTFDADARVAITLYCQAFEEFSNGMAVYSPKNPLMVSETVHYKRGVSQQFSMPSFKMDF
SEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSGTDSVPP
GFEPISLLEALNGLRSVSPAIPSAPLYDEINFSGGLGGDSRQLSSPEHLSDGSLQKGKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTMLSSSPAPTDATATEDVAESLSPDDGDP
EDRMHSGGDILQDCSSEHSILTKTESDPPGDLSLPGSSESTESLKSQSTNCSSQPLLCPT
SSLHLEDEHLNP
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggggtccatcctgagtcgcagaatcgctggtgtcgaggatatcgatatccaggccaac
tcggcctatcgatttccaccgaaatctgggaattattttgcgagccacttcttcatggga
ggagagaaattcgacacaccacatccagagggatacctttttggagaaaacatggacctg
aattttcttggaaatagaccagtgcagtttccatatgtgactcctgcaccccacgagcct
gtgaaaaccctgcggagtctggtcaacattagaaaggactctttgcgcttggtcaggtat
aaagatgactcagacacaccgatggaggacggtggaaaaccaaaggttcagtatggtgtg
gagttcacctttgatgctgatgctcgggtggccatcaccctctactgccaagcatttgag
gagttctccaatgggatggcagtgtacagcccaaagaatccattaatggtctctgaaact
gtgcattacaagcgaggggtgagccaacagttctccatgccgtctttcaaaatggatttc
agcgagtggaaagaggaggatctgaactttgacctcgaccgaggagtgtttccaatggta
atccaagctgtggttgatgaaggggacgattgccttggacatgctcacgtgcttttggca
gcctttgagagacacgttgatggcagtttctctgtcaagcctctgaagcagaagcaaatt
gtggaccgtgtgagctacctcttacaggagatctatgggattgagaacaaaaacaaccaa
gaaaccaagccttcagatgatgagaacagtgacaacagcaacgagtgtgttgtctgtctg
tctgacctgcgagatacgctcatcctgccctgcagacatctgtgtctctgcaactcctgc
gcagacactctgcgttaccaggccaacaactgtcccatctgcaggctgcccttcagagcc
ttgctgcagatcagagctgtgaggaaaaagcctggtgccctttctcctgtgtccttcagc
cctgttctggctcagactatggaccatgatgagcactcaggcacagactcggttcccccc
ggctttgaacccatctcactgttagaggctctgaatggtctgcggtcagtgtctcctgcc
atcccatctgccccactctatgatgaaatcaacttctccgggggtctgggaggtgacagc
agacagctgagctccccagagcatttaagtgatgggagtctgcagaaaggcaaagtcagc
aaatcacctgacagcacccttagatcaccatcctctcccatccaggaggaagatgaggag
aagctgtccgagatgtctgatgctcagccacacacaatgctgtctagcagccccgccccc
acagacgccacagcaaccgaggacgtggcagagtccctgtctccagatgatggtgatcca
gaggacaggatgcattctggaggagacatcctacaagactgcagcagtgaacacagcatc
ttgaccaaaacagagagcgacccaccaggcgacttgtctctgccagggtcatcagagtca
acagaaagcctgaaaagtcagagcacaaactgctccagccagcctctcctgtgtcccaca
agcagccttcatttggaggatgagcacctcaacccctga
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