Siniperca chuatsi (mandarin fish): 122868580
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Entry
122868580 CDS
T08948
Symbol
col1a1a
Name
(RefSeq) collagen, type I, alpha 1a isoform X1
KO
K06236
collagen type I alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122868580 (col1a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122868580 (col1a1a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122868580 (col1a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122868580 (col1a1a)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122868580 (col1a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
122868580
NCBI-ProteinID:
XP_044036604
LinkDB
All DBs
Position
LG21:20024287..20047572
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AA seq
1446 aa
AA seq
DB search
MFSFVDLRLALLLSAAVLLVRAQGEDDRTGGSCTLDGQVFADRDVWKPEPCQICVCDSGT
VMCDEVICEDVDCPNPVIPHDECCPICPDDGFQEPQVEGPKGERGPKGDRGLPGPPGNDG
IPGQPGLPGPPGPPGPPGLGGNFSPQMSGGYDDKSPAMLVPGPMGPMGPRGPPGSPGPSG
PQGFTGPPGEPGEAGSAGPMGPRGPAGPPGKNGEDGESGKPGRGGERGPSGPQGARGFPG
TPGLPGIKGHRGFSGLDGAKGDSGPAGPKGEAGAPGENGTPGAMGPRGLPGERGRTGASG
AAGARGNDGAAGAAGPPGPTGPAGPPGFPGGPGAKGDAGPQGARGSEGPAGARGEPGNPG
PAGPAGPSGNPGADGAAGPKGTPGAAGVAGAPGFPGPRGPPGPQGAAGAPGPKGNTGEVG
APGAKGESGAKGEAGAPGVQGPPGPSGEEGKRGSRGEPGVAGARGAPGERGAPGGRGFPG
SDGSAGPKGATGERGGPGVVGPKGATGEPGRSGEPGLPGAKGMTGSPGSPGPDGKMGPTG
AAGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEAGKPGERGVMGPTGPAGAPGKDGDVG
APGPSGPAGPAGERGEQGPAGGPGFQGLPGPQGAVGETGKPGEQGLPGEAGATGPAGARG
DRGFPGERGAPGPIGPAGARGSPGSAGNDGAKGDAGAPGTPGAQGPPGLQGMPGERGAAG
LPGLRGDRGDQGAKGTDGAPGKDGPRGLTGPIGLPGPAGATGDKGEPGAAGPVGPSGARG
GPGERGEAGPPGPAGFAGPPGADGQPGAKGEAGDNGAKGDAGLPGPAGPTGAPGPQGPVG
NTGAKGARGPAGPPGATGFPGAAGRVGPPGPSGNPGPPGAAGPAGKEGPKGNRGETGPAG
RPGEIGAAGPPGLTGEKGSPGADGAPGSSGMPGPQGIAGQRGIVGLPGQRGERGFPGMPG
PSGETGKQGPGGPSGERGPPGPMGPPGLAGAPGEPGREGTPGNEGSAGRDGAAGPKGDRG
ETGPSGAPGAPGPSGAPGPVGPAGKNGDRGETGPAGPAGSAGPAGPRGPAGAPGLRGDKG
ETGEAGERGMKGHRGFTGMQGPPGPAGHSGEQGPAGAAGPAGPRGPSGSAGSPGKDGMSG
LPGPTGPPGPRGRSGEMGPAGPPGPPGPPGAPGAPGGGFELGFISQPQEKAPDPFRMYRA
DDANVLRDRDLEVDGTLKSLSQQIEQIRSPDGTRKNPARTCRDLKMCHPDWKSGEYWIDP
DQGCTQDAIKVYCNMETGETCVSPTQHEVTKKNWYISKNIKEKKHVWFGEAMSDGFQFEY
GSEGSLPEDVNIQLTFLRLMSTEASQNITYHCKNSVAYMDATAGNLKKALLLQGSNEIEI
RAEGNSRFTYSVLEDGCTSHTGTWGKTVIDYKTSKTSRLPIIDIAPMDVGAPDQEFGLEV
GPVCFL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatttgcggctggcgctgctgctcagcgcagcggtgctcctggtt
agagcgcagggcgaggacgaccgcacgggcggaagctgcaccctggacggccaggtcttt
gcggaccgggatgtgtggaagccagagccatgccagatctgtgtgtgcgacagcggcacg
gtgatgtgcgatgaggtcatctgcgaggacgtagactgccccaaccccgtcatcccccat
gacgagtgctgccccatctgccccgacgacggcttccaggagcctcaggttgagggaccc
aagggagagcgtggacccaagggagacaggggtcttcctggtccccctggtaacgatggt
attcccggccagcctggtctgcctggacctcccggcccccctggaccccctggcctcggt
ggaaacttctcccctcagatgtctggtggctatgatgataaatcccctgccatgcttgtg
cctggacccatgggcccaatgggaccacgtggaccccctggatctcctggtcccagcgga
cctcagggattcactggcccccctggtgagcctggtgaggccggatctgctggtcccatg
ggtccccgtggccccgccggcccccctggaaagaatggagaggatggtgagtctggcaaa
cctggtcgcggtggtgagcgtggaccttccggcccacagggagctcgtggtttcccagga
acccctggtctgcccggcatcaagggacacagaggattcagtggtctggatggtgctaag
ggagactctggccccgctggtcccaagggagaggctggagcccctggtgagaatggaacc
cctggtgctatgggacctcgtggtctgcctggtgagagaggccgcactggtgcttctgga
gctgctggagctcgtggtaacgatggtgctgctggtgctgctggacctcctggtcccact
ggccccgctggtcctcctggattccctggtggccctggagccaagggtgacgccggacct
cagggtgctcgtggatccgagggccccgctggagctcgtggtgagcctggtaaccccgga
cctgctggccccgccggaccttctggaaaccccggagctgatggagccgccgggcctaag
ggaacccctggtgctgctggagttgctggagctcccggtttccccggaccccgtggaccc
cccggacctcaaggtgctgctggtgcccccggacccaagggtaacactggcgaggttggt
gccccaggagccaagggagaatctggtgccaagggagaggctggtgctccaggagttcaa
ggacccccaggaccttctggtgaggagggcaagagaggatccagaggagagcctggtgtt
gcaggagcccgtggagctcctggagagcgaggtgcccctggtggtcgtggtttccctggt
tctgatggctctgctggacccaaaggtgccactggtgagcgtggaggccctggtgttgtt
ggacctaaaggtgccactggtgagcctggccgcagtggtgagcctggtttgcctggagct
aagggtatgactggcagccctggcagccctggacctgatggcaagatgggacctactggt
gccgctggacaagatggccgccccggaccccctggccccgttggagctagaggccagcct
ggagtcatgggattccccggacccaagggagctgctggtgaggctggaaagcccggtgag
agaggagtaatgggacccactggccctgctggtgcccctggaaaggacggtgacgttggt
gctcccggtccctctggacctgctggacctgctggtgagagaggagagcagggacctgcc
ggaggtcctggattccagggtcttccaggaccccagggtgccgttggtgagactggaaag
cccggagagcagggtctgcctggtgaggctggagccacaggacctgctggagctagaggt
gacagaggattccccggtgagcgtggtgcacctggccctattggacccgctggtgcccgt
ggatcccccggatctgctggaaacgatggtgctaagggagatgctggagcccctggtact
cccggagcccagggtcctcctggcctgcaaggaatgcctggtgagcgcggtgccgctggt
cttccaggactgaggggagacagaggtgaccaaggagcaaagggtactgatggagctcct
ggtaaggatggtccccgtggtttgactggaccaattggacttcctggacctgctggagcc
acaggagacaagggagagcctggcgccgctggacctgtcggaccctctggagcccgcgga
ggccctggtgagcgtggagaggccggaccacctggacctgctggattcgctggacctcct
ggtgctgatggacagcctggtgctaagggagaggctggagataatggtgctaagggagat
gctggtctccctggccctgctggaccaactggtgctcctggacctcagggtcccgttgga
aacactggcgctaagggagcccgcggacccgctggacctcctggtgctactggcttccct
ggtgctgctggcagagttggacctcccggcccctctggcaaccctggacctcccggagcc
gctggaccagctggcaaggagggacccaaaggaaaccgtggtgagactggacctgctggt
cgccctggtgagattggtgctgctggacccccaggacttacaggagagaagggtagccct
ggtgccgatggtgctcctggtagttctggtatgcctggacctcagggtattgctggacag
cgtggtattgttggtctgcctggacagagaggagagagaggtttccctggcatgcccgga
ccctctggagagaccggaaagcagggacctggtggtcccagtggtgagcgtggacctccc
ggacccatgggaccccctggactggctggagcccctggcgagcctggacgtgagggaact
cccggtaatgagggatctgctggtcgggatggagctgctggacccaagggagaccgtgga
gagaccggtccttctggagcccctggtgcccctggaccctctggtgcccccggacccgtc
ggacccgctggaaagaatggtgaccgtggagagactggacctgctggccccgctggctct
gctggccctgctggacctcgtggccctgctggagctcctggacttcgtggagacaaggga
gaaactggagaggctggagagagaggcatgaagggacacagaggattcactggcatgcag
ggaccccctggacctgctggacattctggagagcagggacccgctggtgctgctggaccc
gctggacctagaggcccttctggatctgctggttctcctggtaaggatggtatgtctggt
ctccctggacccactggacctcctggacctcgtggacgctctggagagatgggacctgct
ggtcctcctggacctcctggaccccccggagcaccaggtgcccctggcggcggattcgag
ctcggcttcatctcccagcctcaggagaaggccccagatcccttccgcatgtaccgcgct
gatgacgctaacgttctccgtgaccgcgacctggaggtggacggcaccctgaagagcctg
agccagcagattgagcagatccgcagtcccgacggaacacgcaagaaccccgccagaacc
tgccgtgacctcaagatgtgccaccctgactggaagagcggcgagtactggattgaccct
gaccagggctgcactcaggacgccatcaaggtctactgcaacatggagaccggagagacc
tgcgtatccccaactcagcacgaggtcacaaagaagaactggtacatcagcaagaacatc
aaggagaagaagcacgtctggttcggcgaggctatgagcgacggcttccagttcgagtac
ggcagcgagggctctctgccagaggatgtcaacatccagctgaccttcctgcgtctcatg
tccaccgaggcatcccagaacatcacctaccactgcaagaacagcgttgcctacatggac
gccaccgccggcaacctcaagaaggccctgctcctccagggctccaacgagatcgagatc
agagccgagggcaacagccgcttcacctacagtgtactggaggatggatgcacgtcacac
accggtacatggggcaagacagtcatcgactacaagacatcgaaaacatctcgcctgccc
atcattgatatcgctcctatggacgttggtgctccagaccaagagttcggccttgaagtt
ggacctgtctgtttcttgtaa
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