Siniperca chuatsi (mandarin fish): 122868590
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Entry
122868590 CDS
T08948
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122868590
03036 Chromosome and associated proteins [BR:
schu03036
]
122868590
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122868590
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122868590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122868590
NCBI-ProteinID:
XP_044036616
LinkDB
All DBs
Position
LG21:16619936..16636962
Genome browser
AA seq
2057 aa
AA seq
DB search
MEDKKKKKEDKKKREASQKVPEQKIKVPESAKPPCSQPLATPGSVSPSPGPVVPSSPSPG
AAGVSAQVPPGGGNNAKQRTAVANGQPSSSPSGSQTSQQQRYMSREVPPRFRCQQDHKVL
LKRGQPPLSSMLLGGGGGEGGAGGVGGGSGWLATPPLSSQGADNPNANVTGGTDSNLGSS
SASPPNSSSSTLCVAALSSSSTTTTTTSTYANSTWGAGSGSPSFSQGCGKVIVDGTDLGD
WPSILGGAKLSSDGAGGGVQEQDCPGNNNNSSASWSERNIQQKGGAVGGGAGNMDNPSSP
RSSPLSSSSSLNECVQSSGGVWGSSTSSQVDAGLGSAAFYNSKVSHLLPGPQESPVGGSS
SVPGANFNPNVNPSAWPALVQGGTSTSASDSLPLHSSITSASSFPASTTLIATHSLSSVN
QTGLPQQHTETAVGEQQQHLGSLGLELGSGRGTRGAGPNQEGGDDGGVASVEGEGSGNLS
GSSSSSSAASSSWRSMPPVSSDLSARASQADGWGGGGTGAQGQEGNVWGVGSQGDKAGWG
TGNDGGSNTPVVSQGAWEGSSSEAEWGGTVGGVSSSNLAIGGGRGGDGSSNSSSNGGSVG
IGGSVLQDSASPKFATMTKAWDNQKGMESGDGAVGEWGGGAGQGGGTGGGGPSSSSGGGS
IAGSGGGGSDSGQKQEQASSVLHCPQQTSNAEVALLSMLNRSDLDPRVLSNTGWGQTQIR
QNVAWDLDTTTRVGNRNERSTSSSSAFSSATMNTTTTRGPGYPSNASSITNDLSAGSHTT
SLNSGPATVRDGWDGGATQSTCGPHIPGSTMRKPGTPEENMEGNQVKAAGGWGDLPPENQ
GKGWGAEEQQWGDRRGGGGNWRDFGEQGSGWADGPEDKGTGGWKGTGRGEAGGWRGQCGG
GGDWGQRDSTPGGGCGDGRSRGGSKSDEGSSWGNLDEGGSQRGGWGGGDVGGSKSHQDWG
SAKPHTAAQIPNSQVAPMKAPNQQQHQSQGQQPQGGPMQGGWNSRSNVGGGGPPSKNQNQ
SSGWTSGPIPQISGGGGDSLEPSGWEEPSPQSISRKMEIDDGTSAWGDPTRYNSKNVNLW
DKNSATPGQSHGQQAPPPPPPPPMQQQQPPRRQHGMQHSRDTNPGNAAVGPDMWGGGAQS
VDNGTAAWGQVSDAATGWGDSDEPGKASGWGNPSPNPGKPVTKSVESWGGKAEASVAASR
HPSWDEEDDGGGGVWNSTGSQGSSSSFNSGGWGQTHGGKRGNIKSGGGDSWMNPVSRQFS
NMGLLGDDPSVDKKMEGDKRGITDYNGEMRRGGRGGGGYRMPSSKDMGPVDMGPYGEKMG
GHGVFVGSGGGMPQSRGMHQPGIHPMNPSQGLRAQVPHQFLSAPVTGPMLKQMPSPGGSV
GGVVGGVGGVSGVGSVGGVGGVGGGVFPPQISPQQLAMLSNIYPHMQQFHLACQLLLQQQ
QQQQQLLQNQRKFPQPQPLRQQPDPQQLARIMAILQQQRQHQQGGVGGAAAGGGSSKLSP
SHLGGGLSKQPMVDPLPHPGMGGPLSDLHAKTQGMYSGLAPGGNLSGLELSPMMGGMKDT
GGQQSRFKWMMEGHSPAPSPPDTALHKNGPLPSVIKVRGGSPYSQYEMLGGDGLGIPPQG
SADNWHRTPGSKMGNKPPTSSWPPEFQPGVPWKGIQSSGDPESDPYMTPGSVLGSPGPPS
LNDSDHQLLRDNIGPNPSLNTSLPSPGAWPYSASDSPLSNAHSTGKYSEYKPSWPPEPIG
QNKLWKTNRNSSQLPRPPPGLTNQKQASPSPWGSGGPRLARSWGGGGINQESRFGSGSAW
SDGVASRGSCWLLLSNLTPQIDGSTLRTICMQHGPLLTFHLGLTQGSALIRYSSRQEAVK
AQGALHMCVLGNTTILAEFVSEEEVARYFAHSQAGGAEGVSSGGASAGGTQGSSGTGTAV
ASSGGSSPGNERAAAGTTSGGNGNGGGGGESGAAVLGSVRSSGSAWQSLDGTGSSSETSS
AQGPGLGIFSQWSTNGAGEGGGVGGVESGRSGLWGGMTAGYPSSSLWGAPQMEERHQMDS
PAALLPGDLLGGGADSI
NT seq
6174 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaaaaagaaagaagataaaaagaaaagggaagcctctcagaaggtg
ccagaacagaaaatcaaagtgccagaatcagccaagcccccctgttcccagccactcgcc
accccaggctcagtgtcccccagccctggccctgttgtcccctcatcccccagtcctggt
gcagccggggtttctgcacaagttcctcctggtggcgggaacaatgcaaagcagcggact
gctgtggccaacggacagccctcctcctccccctctggaagccagacctcccaacaacag
cgatacatgtctagagaggttccaccaagatttcgctgccagcaggaccataaagtgcta
ctgaagaggggccagccaccgctgtcctccatgctgctggggggtggaggaggggaaggg
ggtgcaggaggggttggaggaggcagtggctggttagccaccccacctctttcctcacag
ggagcagataaccccaatgcaaacgtaactggaggcacagattccaacctgggttcatcc
tccgcttcaccccccaattcctcctcatccacattatgtgtcgctgctctgtcgtcttct
tctactactactactactacttcaacttatgcaaattccacatggggggcaggctctggc
agcccgtccttttctcagggctgcgggaaggtgattgtggatgggactgacctgggggat
tggcctagcatcctaggcggggccaaattgagttctgatggggctggaggaggggtgcag
gagcaagactgccctggtaacaacaacaacagtagtgcctcatggagtgagagaaacatc
cagcagaaaggaggagcagtaggaggaggagcagggaacatggacaatccttcctcacct
cgttcttctcctctttcctcctcttcctcgcttaatgaatgtgttcagtcaagtggtggt
gtgtggggctcttccacctcttctcaggtggatgcagggctaggatcagcagcattttac
aattccaaagtctcccatcttcttcctgggcctcaggagagccctgtgggtggcagcagt
agtgtccctggtgccaattttaaccccaacgtgaacccctctgcctggcctgccctggtg
cagggtgggacatcaacttcggctagcgacagccttccactacactcgtccattacttca
gcttcctcgttccctgccagcaccaccctcattgccactcactctctttcatctgtgaat
caaactggtctccctcagcagcacactgagacagctgtgggagaacagcagcagcactta
ggaagccttgggctggagttgggttcaggcaggggaacacgaggagcaggaccaaatcaa
gaaggtggcgatgacggtggggttgctagtgttgaaggagaaggaagtggcaatctttct
ggttcttcgtcttcctcctctgctgcctcttcttcttggagatccatgcctccagtgtcc
tctgacctcagtgcacgtgcctcacaggcagatggttggggtggaggagggactggagct
caggggcaggaagggaatgtgtggggtgttggtagccagggtgacaaggcagggtggggc
acgggaaatgatggtggctcaaataccccagtggtatctcagggagcgtgggaaggaagc
agttcagaagcagagtggggtggcacagtgggaggtgtaagttcgagtaatttagcaata
ggaggtggaagaggaggagatgggagcagcaacagcagcagtaatggaggcagtgtaggt
attggtggcagcgttttgcaggactctgcctcaccaaagtttgcaactatgacaaaagct
tgggacaatcagaaagggatggaaagtggggacggggcagttggagagtggggtggagga
gcagggcagggtggaggcactggaggtggaggaccctcatcctctagcggaggagggtcc
atagctggaagtggtggaggagggagtgatagcggacaaaagcaggagcaagcctcgtct
gtactccactgtccccaacagacctccaatgctgaagtggccttactcagcatgctcaat
cgatctgacctggaccccagggttctgtctaacacgggctgggggcagacccagattcgc
cagaatgtggcttgggaccttgacaccacaacaagagtaggaaacagaaatgaaagaagt
acttcatcttcctctgcattctcatcagcaaccatgaacactaccactactcgcggtcca
gggtacccgtctaacgccagttcaataactaatgatctatctgctggcagtcatacgacc
agcctgaactctggccctgctacagtgagggatggctgggatggtggtgctacacagtcc
acctgtggtcctcacattcctggtagcactatgaggaagccaggaacgccagaagaaaat
atggagggcaaccaggtgaaggcagctggaggctggggtgatctcccacctgaaaaccag
ggcaaaggatggggggctgaagaacaacaatggggggatcgcagaggtggaggagggaac
tggagagactttggagaacagggtagtgggtgggcagatggtccagaagataaaggtaca
gggggatggaaggggactggaagaggggaggcaggtggttggagaggacagtgtggaggg
ggaggagactggggacagagagactctacacctggaggtgggtgtggagatgggcgaagc
agaggtggaagcaaatctgatgagggatcttcttggggtaatttggatgaagggggatct
cagcgaggaggatggggagggggagatgtgggtggaagcaaatcccaccaggactggggg
agtgccaagccccacacagcagcacagataccaaacagccaagtggcaccaatgaaagcc
ccaaatcaacagcagcaccaatcacagggccagcagccacaaggaggtcccatgcaagga
gggtggaacagccggtccaatgttggaggtggaggtccaccatccaagaatcagaaccaa
agttcgggctggacctccggccccatcccccaaatctctgggggtggaggtgactccctg
gagcccagtggctgggaagaaccctcccctcagtccatcagtcgcaaaatggaaattgat
gatggcacttcagcctggggagacccaactcgctacaacagcaagaatgtgaatttatgg
gacaaaaacagtgctacacccggccaaagccacggtcagcaggccccaccaccgccgcca
ccaccacccatgcagcaacaacagccacctagaaggcagcatgggatgcagcacagcagg
gacacaaatcctggcaatgctgcagttggtccagatatgtggggaggaggtgcacaatct
gtagataatggtacggctgcgtggggccaggtgtcagatgcagcaacaggttggggtgat
tcagatgaacccggcaaagcttctggctgggggaacccttcacccaaccctggtaaacct
gtcaccaagtcagtggaaagctggggtggtaaggcagaggcctctgttgcagcctcccgt
caccccagctgggacgaggaagatgatggtggtggaggggtctggaacagcactggctcc
cagggaagcagctcctccttcaactctggaggctggggtcagactcatggaggaaagaga
ggcaacatcaagagtggaggaggggacagctggatgaacccagtgtcacgccagttttca
aacatgggtcttctgggtgatgacccaagtgttgacaaaaagatggaaggagacaagaga
ggaataactgactataacggagagatgcggaggggaggaagaggtggaggaggttaccgc
atgcctagttccaaagacatgggtcctgttgacatggggccctatggtgaaaagatgggt
ggccatggagtgtttgttggcagtggcggagggatgcctcagtctcgagggatgcaccag
cctggcattcatccaatgaacccctcccaagggttgcgtgctcaagtgcctcatcagttc
ctgtctgctccggtgacgggtcctatgctgaagcagatgccctctcctggtgggagtgtg
ggtggagtggttggaggagtaggaggcgtcagtggcgttggaagtgtcggaggggtcggt
ggtgttggtggaggagtgttccctcctcagatttccccacagcagctagccatgctcagc
aacatttacccccacatgcagcagttccatctggcttgtcagctcctgctacaacagcag
caacagcagcagcagctcctgcagaaccagaggaagttccctcagcctcagcctctcagg
cagcagccagacccacagcagttggcaaggattatggctattctgcagcagcagagacag
catcagcagggtggagttggaggagcagcagcaggaggagggagctccaaactgtccccc
tctcacctgggaggaggcctttccaaacagcccatggtagacccccttccgcatcctgga
atggggggccccttatcagaccttcatgccaaaacacaagggatgtactcggggcttgcc
cctggtggtaacctgtcaggactggagctcagtcccatgatgggagggatgaaggacaca
ggaggacagcaatcccgcttcaaatggatgatggagggacactccccagctccatctccc
cctgacacagcccttcacaagaatggccctttacccagtgttataaaggtgagaggagga
tccccttattcccaatatgaaatgctgggcggtgatggtttggggattccccctcaaggc
tctgcagacaactggcaccggacccctggaagtaaaatgggaaacaaacctcccacatcc
agctggcctccagagttccagcccggtgtgccctggaagggaatccagagtagtggagac
ccagagtctgacccctacatgacccctggtagtgttcttggctccccaggacccccgagc
ctcaacgactctgaccaccagttactgcgagacaacatagggccaaacccctccctcaac
acctcgctgccttcacctggtgcctggccctatagtgcctcagacagccccctcagcaat
gcacacagcacaggaaagtactcggagtacaaacccagctggcccccagagcccatcgga
caaaacaagttgtggaagaccaatcgcaacagctcacagctaccacgccctcctcctggc
ttaaccaatcagaagcaggcctcgccctccccatggggtagcggaggcccacggttggcc
cggagctggggagggggcgggattaatcaagagtcaagatttgggtcaggctcagcttgg
agcgatggtgtggcctccagaggcagctgctggttgctgctgagcaacctgaccccccag
attgatggctccacgctaaggactatctgcatgcagcatggccccctgctgaccttccac
cttggcctgacccagggcagtgctctgattcgctacagcagccggcaggaagcagtcaag
gcccagggtgcactgcacatgtgtgttctgggcaacaccacaatcctggcagagtttgtg
agtgaggaagaagtcgctcgctattttgcacattcccaggccggcggggcagagggggtc
agctcgggaggggcatctgccggtgggacgcagggttcatctggaacaggcaccgctgtg
gccagcagtgggggcagctccccagggaatgagcgggcagcagcaggcacaacttcaggt
ggaaatggaaatggtggtggaggaggagaaagtggagcagcggttctaggtagtgtgagg
tcctctggctctgcctggcagagtcttgatggtacaggcagttcttcagaaacctcttca
gcccaaggacccgggctggggatattttcccaatggagcaccaacggggcaggggaggga
ggaggtgttgggggagtggagtctgggaggtctgggctctgggggggcatgactgcggga
taccccagcagcagcctgtggggggcaccgcaaatggaggaaaggcaccaaatggacagc
cctgccgcattgttgcctggcgacctgctggggggaggagctgattccatctga
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