Siniperca chuatsi (mandarin fish): 122869106
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Entry
122869106 CDS
T08948
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122869106 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122869106 (xab2)
03041 Spliceosome [BR:
schu03041
]
122869106 (xab2)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
122869106 (xab2)
Spliceosome [BR:
schu03041
]
Complex B
Other components
Prp19-related factors
122869106 (xab2)
Complex C
122869106 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_15
ARM_TT21_C
TPR_16
ARM_TT21
TPR_MalT
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
122869106
NCBI-ProteinID:
XP_044037675
LinkDB
All DBs
Position
LG21:complement(9873108..9880808)
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGQTDVMFDDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITEPGYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEDDDIDMELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEG
YGLARHAMAVYERATQAVDTEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTVSDLAPGQMVIDDMKMLEQKAQQLAAEAEQDK
PKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDDEDEDDENQGPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttcgttaaacggacaaactgatgttatgtttgatgacgatgatctgccttatgaa
gaggagattatccggaacccatactcagtcaagtgctggatgcgttacatcgaattcaaa
cagaatgggccgaaatccaccctcaacatgatatatgagcgggctctgaaagagctgccg
ggcagctataagctgtggtacaattatcttagagagagacggaaacaagtcaaagggaaa
tgtatcactgaaccaggctatgaagaagtcaataattgccatgaaagggcactggtgttc
atgcataagatgcctagaatatggcttgattactgccagttccttgtgtctcaatgcaag
atcacaagaagtcggcaaacatttgaccgggcacttagagctcttcctgttactcagcac
ccacgcatctggcctctatatctccgctttgtccgtaacctgcccctgccagagacagcc
atccgggtgtaccgcaggtaccttaagctttctccagagaatgcagaggaatacatagac
tacttacggtctgttggccgcttggatgaagcagctgtgcgactagcagctgttgtcaac
gacgaaagctttgtgtctaaagagggcaagtctaactatcaactgtggcatgagctatgc
gacctgatctcccagaaccctgataaggtcacctctctgaatgtaggagccatcatccga
ggaggcctcactcgcttcactgaccaacttggaaaactctggtgctctttagctgactat
tatatcaggagtggtcactttgagaaggcccgtgatgtgtatgaggaggccatccttacg
gtggtaacagtaagggatttcacacaagtgtttgatagttatgcccagtttgaagagagc
atgattgcagcgaagatggagaccactgctgagatggggcaggatgaagatgatgacata
gacatggagcttagactggcccgctttgagcagctgatagcccggcggcccctcttgttg
aacagtgtactactacggcagaaccctcataatgtccatgagtggcacaaacgggtaaaa
ctgtatgagggcaatccacggcagatcatcaacacatacactgaggctgttcagactgtg
gatccaatgaaggccacagggaagcctcactctctctgggtttcctttgctaagttctat
gaggaaaatgagcagctggatgatgccaggacgatttttgagaaagccaccaaggtgaac
tacaagcaggtggatgaccttgctgcagtgtggtgtgaatatggagagatggagctacgc
catgagaactatgaacaggcactgcgcatactgaggaaagctacagccatcccatccaag
aaagctgagtactttgatgcatctgagccagtccaaaacagagtctacaagtccttgaag
gtctggtctatgctggcagacttagaggagagtcttggcactttccagtctacaaaagca
gtgtatgaccgcattattgacctccgcatcgccacgccacagatcatcatcaattatgcc
atgttccttgaagagcacaactactttgaggaaagcttcaaagcatatgagcgtggtatc
gctctcttcaggtggccaaatgtttatgacatctggaacacttacctcaccaagttcatt
gatcgttatgggggcaagaagctggagagagctagagatttatttgaacaagccctggat
ggctgccctgccaagtttgccaagaccatttacctcttgtatgccaaattggaggaggga
tatggattggcacgacacgccatggctgtctatgaaagagcaacgcaggcagtagacact
gaggagagacatcacatgtttaatatctacatcaagagagcagctgaaatttatggagtc
acatataccagagcaatttaccagaaagctattgaggtccttcctgatgagcatgcaagg
gacatgtgtctgcgatttgctgacatggagagtaaactgggtgagattgatcgggccaga
gcaatctactcctactgctcccagatctgtgaccccagggtgactgctaatttctggcag
acctggaaagaatttgagatccgccatggaaatgaggacactattagagaaatgctgagg
atcaaacgcagtgtccaggccacatacaacacccaggtcaactttatgtcctctcagatg
cttaaggccacaacaagctccacagtgtcagatcttgctcctggccaaatggtaattgat
gacatgaagatgctggagcagaaagcacagcagcttgctgcagaggccgagcaagacaaa
cccaagcccaaagagaagattctctttgtcaggagtgacacctctcgcagtgagttggct
gagctttccaaacaagccaatcctgatgagatcgatattgatgatgatgacgaggatgaa
gatgatgaaaaccagggaccagatgaggtgcaacttgaacagaagagtgtccccacagct
gtctttggtggacttaaagatgactga
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