Siniperca chuatsi (mandarin fish): 122869215
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Entry
122869215 CDS
T08948
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122869215 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
schu03036
]
122869215 (tnrc6c1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122869215 (tnrc6c1)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122869215 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
RRM_1
UBA
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
122869215
NCBI-ProteinID:
XP_044037907
LinkDB
All DBs
Position
LG21:14662095..14732075
Genome browser
AA seq
1954 aa
AA seq
DB search
MLVDIHTARKHLREKDPDRGRERLWTCHQVSTETLRTNPSQSAQYSCEKKQKTREENHLM
EDKKKKRQEEKKKKEAAQKKATEQITKDNCELPLVKVPDSAKLDPTPPLPPVNPSAVPSV
PPSSGNGKRAPSGGQPQTAQQPQTPLQQRYPPREVPPRFRQQEHKQLLKRGQPLPTGTLP
LTTTRRPATTEPAAAVAIHSSPSCSSSSTASLPTELPPQSGQGAQYDNPLWGHLPANRSA
TSAASSTNLSGWDQLIIDQKDTEAWPSITLSQSQATPGGCPLDTDPGRLTSSSSSSSSST
SSSCSTVSMATGANSQTGHFSANHLSSKANSGPSPANHTGTSMLSSQVAANRSWGSGPGP
SHCPPQSSAGNEGKSDSPVGGGGSRGWGSSSSSSSTNFNLNLNPNANPSAWPMLGHDGGG
TGGGSSGGANTISPPQPTPNLCNPPGPQPAQTSTCTGANTNSNSSGIGSAWGNIMTSDTS
EPHSSPSTNVSFSSEPQNLKTDGPNHTNKQEPPSPIRNLPGWGSAPVSLGSMAQPPPGGP
QVNGEEGSSVWGNSGDSKAPSSKEAPGWDSGWGCGGGGAGNSGSWGDQSGGGWGKQHTEE
AQGGWDAPSSPPQDPQASPWNRAVSTAGASEGSSDSIEGHPRHRDRSSSDNPAPLLPAQD
LDPRVLCNTGWGQTPVRQHTSWDMDNTKRKNDVGAESWGSGPTTPSDAQGPSNTNLGPSQ
RTDPGSKNDVPGSQGASGWGGSIAATNQSSSGWGEPPNNIKPPSGPGGWGNPPAGGPTTN
IPKNGGQSWGEEKSAGWDESHIKATSQGWGEQPKASHSWGNRGGSSNAGDWREPEESKKS
PTNPGWEGEAGGWKENPRGWGMSSSGPGISGAGGNGGWGEPVCQRPSGLPQGWGGKPQDG
PSGNSEGGSIGSWGGSGSVKQSGGWSGSKQESSAEGEPTGWEEPSPPSIRRKMEIDDGTS
AWGDPVTYNKAVNLWDRNNPGMPQAKVTTGGNNPPGPKNNHPPSHNHPYHGPPAPLQNHA
QNSQNPGPTSGPMDPVVQHQSGPSHNRGPLIAQGWGERPSSHTKSESTWGEPAPPPVRVD
NGTSAWGKPTGSCGGWGDSNPDSYGRGNPTMTSASCKPAPKSMQDGWGGGGEELNLSGGQ
WDAEEGDMWNSAASQESNSSCNSWGNASKKIPQKGKVPGKQEDAWIMNRLIKQLTDMGFP
RDPAEEALKSNSMNLDQAMSALLEKKTELDKRGMGIAGHDYNNGLINKPMSSPRPPLLSK
DPSADPRLPFMDKQMQSGMFGGGGAAQARAMQQPQPPPQPPVPPLSSSQPSLRAQVPQFL
SPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRN
VSGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQQQQPPPSHSGLHPGGAKSPLD
SFPGHPQAPGLPDLQTKEPQSSPNTYSPYSLSGLNPNMNVNCMEVGSLSMKEPPQPQSRL
SQWTHPNSIESLSGSSSPLEPNLGKHGEKRKGIPGANLGPPSKPHQLEDSYSPYNLMSSS
ESPTSPLVPPDSWGQGKSSSDKMANGTNINWPPEFCPGVPWKGLQNIDPETDPNVTPGSV
PSGPTINTNIQDVNRYLLRDRSGGSSPTSSQNEALPPSTDWPVSAYTSSFSLSSPETDDA
GKLSEMKSTWSPGPISHSQASLSHELWKVPQGPRSSNTAPSRPPPGLTNAKPSSTWGGNS
LGLAQGWSSSYTTAGTTWSTDSSTRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLN
LTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQLLGGTTSWQ
ATPGTNQTRMGGSVSGASHPIGHSPHWNNNNGSSSNSSGLGTGGAKTGGELLWGGVQQYS
SLWGPPSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5865 nt
NT seq
+upstream
nt +downstream
nt
atgctggttgacatacacactgctagaaagcacttgagagagaaagatccagacagagga
agagagaggttatggacctgccatcaggtgtctacagagacactgaggacaaacccatca
caatcagcacagtacagctgtgagaagaagcagaaaacacgagaagagaaccatttgatg
gaagataagaaaaagaaaaggcaagaagagaagaaaaagaaagaagctgctcagaaaaag
gccacagaacagataaccaaagacaactgtgaactccctctcgtcaaagtgccagactct
gccaagctcgaccccacccctcctcttccccccgtcaaccccagtgccgtcccatctgta
cccccaagcagtggcaatggcaagcgtgccccatccggaggtcagccgcagacagcacag
cagccccagactccgctccagcaacgctacccacccagagaggtgcccccgcgcttccga
caacaggagcacaagcagctgttgaagaggggccagcctctgcccaccgggaccctgcct
ctcaccacaacgagacgtcccgccactactgaacctgcagcagcagtagccatacactcc
tctccctcctgctcctcttcctccacagccagcctgcctacagaactgcccccacagagc
ggccagggagcgcagtatgataatcccctctggggacacctgccagccaaccggagtgcc
acaagtgctgcatcttccaccaatctcagtggctgggatcaactgatcattgaccagaag
gacacagaggcttggccttctattaccctcagccagagccaggccactccaggaggatgc
cctttggacactgaccccggtcgcctgaccagcagcagcagcagcagcagcagtagtact
agcagtagttgtagtacagtgagtatggccactggggccaatagccagacaggccacttc
tctgccaaccatcttagcagcaaggccaacagtgggcccagccctgcaaatcatactgga
accagcatgctctctagccaggttgcagcaaatcgcagctggggctctgggcctggaccc
tcccattgcccccctcagtcctcagcggggaatgaagggaagagtgacagcccagtgggg
ggaggaggcagcaggggctggggctcttcttcatcatcctccagcaccaactttaacttg
aacctaaaccctaatgccaacccttctgcctggcccatgttggggcatgatgggggtggc
acagggggaggcagctcagggggagccaacaccatttcacctcctcaacctacacccaac
ctctgtaatccacctggcccccaaccagcccagaccagcacctgtaccggagccaacact
aacagcaactcctcggggattggcagcgcctggggtaacataatgacctctgacacgtca
gagccacactcctccccgtccacaaatgtgtctttcagttcagaacctcagaaccttaaa
actgatggaccaaatcacactaataagcaggaaccccccagccccatccgcaacttgcct
ggctggggtagtgcacctgtaagcttgggttccatggcccagcccccaccagggggccca
caggtcaatggagaagaaggtagctcagtatggggtaacagtggcgactcaaaggcacct
tcatctaaggaggcacctggttgggactctggctggggctgtggaggaggtggagcagga
aactctggaagctggggtgaccagtcaggtggaggctgggggaagcagcacactgaagag
gcccagggaggctgggatgcccccagctctcctcctcaggatccacaggctagtccttgg
aacagagctgtgagcacagctggtgccagtgaagggagcagtgacagcatcgaaggacat
ccccggcacagagaccgctcatccagtgataatccagctcccctgctgcctgcccaggat
ctggaccccagggtgttgtgtaacactggctggggacagacccctgttcgccagcacacc
tcctgggacatggacaatactaaacgcaagaatgatgtaggcgctgaatcatggggctct
ggcccaaccactccaagcgatgcccaggggccctccaacactaacctgggcccctctcag
aggactgaccctgggagcaaaaatgatgtgcctggttctcaaggagcttcaggttggggg
gggagcatagctgctaccaaccagtctagctctggttggggagagccacccaacaacatt
aagcccccaagtggccctggtggctgggggaaccctccagcaggaggccccaccaccaat
ataccgaagaatgggggtcagtcctggggagaggagaagtcagctgggtgggatgaatct
cacatcaaggcaacatcccagggctggggagagcaacccaaagcatcccacagctggggc
aatcgtggagggagcagtaatgcaggagactggagagaaccagaagagagcaaaaagagt
cccaccaaccctgggtgggagggagaagcaggaggctggaaggaaaacccacgaggctgg
ggaatgtcttcttcaggacctgggatatctggagctggaggaaatggaggctggggagag
ccagtttgccagcgtcccagtggccttccccaaggttgggggggcaagcctcaggatggg
cccagtggtaatagtgaaggagggagcataggctcttggggtggctcaggctcagtgaag
cagagtggaggctggagtggcagtaagcaggagtcctcagctgagggtgagcctacaggc
tgggaagagccctctccaccttcaatccgacgtaagatggagatagatgatgggacctca
gcttggggtgaccctgttacctacaacaaggcagtcaacctgtgggaccggaacaatccg
ggaatgccccaggctaaagttaccactggaggcaataaccccccaggtcccaagaacaac
catcccccctctcacaatcacccctatcacgggccgcctgcacctttacagaaccacgcc
caaaactcccaaaacccaggacccaccagtgggcccatggatcctgttgtccaacatcag
tctgggccatctcacaacaggggtcccctgatagctcaaggttggggagagcgacccagc
tcccacacaaaatcagagagcacttggggggaacctgcaccccctccggtcagagtggac
aatgggacgtctgcctggggaaaacctaccgggagctgtgggggctggggagacagcaac
ccagacagctatggcaggggcaacccgacgatgacatctgcatcttgcaaacctgccccc
aaatctatgcaagacggatggggaggtggaggtgaagagctgaacttgtcgggaggtcag
tgggatgctgaggagggagacatgtggaacagcgctgcctcccaggagagcaactcctcc
tgtaactcttggggcaatgcatctaaaaagatcccacagaagggaaaggtcccagggaag
caagaagatgcctggatcatgaatcgtctcatcaaacagctgacagacatgggcttccca
agggatccagcagaggaggctctgaagagcaacagcatgaacctggaccaggccatgagt
gccctgctggagaagaagacggagctggacaagcgggggatggggatagccggccacgac
tacaacaacgggctcatcaacaagcccatgagcagccctcggcctccgcttctttccaaa
gacccctcggcagacccccgcttgcccttcatggataagcagatgcagagtggaatgttt
ggcggcggtggagcagcacaagcccgggccatgcagcagccgcagccgcctcctcagccg
ccagtgccgcctctcagttcctctcagcctagtctacgtgctcaagtgcctcagtttctc
tcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggtctgaatcct
gcacttttaacctcaccaataaaccctcaacatatgacccttctgaatcaactttaccag
ctgcaactggcataccagcgtttacaaattcagcagcagatgttgcaggcacagcgcaac
gtttctggccccattcgacaacaagagcagcaagttgcacgtacaatcaataacatgcag
cagcagatccaacagcaccagcgtcagctggcccaggccctgctaatgaagcagcagcaa
cagcagccgcccccctcccactctggcctgcatcctggcggggccaaatcccccctggat
tcatttccaggtcacccccaggctccaggcctccctgacctgcagaccaaagagccgcag
tcatctccgaacacctacagcccctactctctctctggactgaatccaaacatgaatgta
aactgcatggaggtgggaagtctgtctatgaaggaacccccccagcctcagtcgcgcctg
tcgcagtggacgcatcccaactccatcgaaagcctctctggaagctcatctcctctggag
cccaacctgggcaagcatggtgagaagagaaagggaatcccgggtgccaacctgggcccc
cctagtaagccccatcagctggaggactcttacagcccctacaatctgatgtccagctca
gagtctcctaccagccccctggtccccccagacagctgggggcagggcaagagcagcagt
gataagatggccaatgggaccaatatcaactggccaccagagttctgccccggcgttccc
tggaagggcctccagaatatcgaccctgagacagaccccaacgtgacccccggcagtgtc
cccagcgggcccaccatcaacaccaacatccaagatgtcaaccgctacctgctgcgggac
aggagtggaggctcctctcccacttcatctcagaacgaggctctgcctccctccactgat
tggccagtcagtgcctacactagctcgttcagtctgtcgtccccggagacggacgatgca
ggtaaactgtcagagatgaaatctacttggtctccaggccccatttctcacagccaggcc
tctctgtcccacgagttgtggaaggtcccccagggcccccggagcagcaacacggcccct
tcccgccccccgcctggcctcaccaacgccaagccttcctcaacctgggggggcaactcc
ctgggtctggcccaaggctggagcagctcttacaccacagcaggtaccacgtggagtaca
gacagctccaccaggaccagtagctggctggttctgaggaaccttactccacagattgat
ggttcgactctgcgtacactgtgcatgcagcacggccccctcatcacattccacctcaac
ctgacacagggcaacgctgtggtgcgctacagctccaaggatgaagctgccaaggctcag
aagtccctgcacatgtgcgtgctcgggaacaccaccattctggcagagtttgctggggaa
gaggaagtgaaccgcttctttgcacagggccagttgcttggcggaacaaccagctggcag
gccactccaggcaccaatcagacgcggatgggtgggtccgtgtccggagcctcccatccc
atcggtcactcaccccactggaacaacaacaacggcagcagcagcaatagcagtggcctg
ggaacaggcggagcaaagacgggcggagagttgctgtggggtggcgtgcagcagtattcc
agcctgtggggacccccgagtggagaagagggacgggtcatggggagtcccaccccaatc
aatacgctgctgcctggggacctgctgagtggggagtccatgtag
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