Siniperca chuatsi (mandarin fish): 122869450
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Entry
122869450 CDS
T08948
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122869450 (ddx39ab)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122869450 (ddx39ab)
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122869450 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
122869450
NCBI-ProteinID:
XP_044038421
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All DBs
Position
LG21:complement(18088179..18094300)
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AA seq
427 aa
AA seq
DB search
MAENDVDNELLDYEEDEEPQGAPESEAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAII
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKNCPHIVVGTPGRILALIR
NKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRNTPHEKQVMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYSKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVARCI
ALAQLLLDQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVAELPDEIDIS
SYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaatgatgttgataacgagctgctcgattatgaagaagatgaagagcctcaa
ggagcccctgagagcgaagcccctgcaggcaagaaggaggtgaagggttcttacgtttcc
atccacagctctggattcagagattttctgctcaaaccagagctgctccgtgccatcatc
gattgtggttttgagcatccatctgaagtccagcatgaatgcatcccacaagctatcctg
ggcatggatattctgtgccaggccaaatctggtatgggcaagacagccgtgtttgtgctg
gccacactgcagcagattgaacctgttgatggacaggtgtctgtattagtcatgtgccac
acacgagagctggccttccagatcagtaaagagtatgagcgtttctccaagtacatgccg
acagtaaaggcagcagtattctttggtggcatggccatcaagaaggacgaggaggtcttg
aagaagaactgccctcatatcgtcgtcggaacgccaggccgcatcctcgctctcatccgg
aacaagaccctcactctgaagaacgtcaagcactttgtcctggatgagtgtgacaaaatg
ttggagcagctagatatgaggcgtgacgtacaggacatcttcaggaatacacctcatgag
aagcaggtcatgatgttcagcgcaacactgagtaaggagatccgaccagtctgtcgcaag
ttcatgcaggatcccatggaagtatttgtggacgacgagaccaaacttacactccacggc
ctgcaacagtactactccaagctgaaggacagtgagaagaaccgcaagctgtttgacctg
cttgacgtgttggagttcaaccaggtggtgatctttgtcaagtcagtcgcacgctgcatt
gctctggcccagcttctgctggatcaaaattttcctgccattgccatccacaggggaatg
gctcaggaggagaggctgtctcgctatcagcaattcaaggacttccaaaggcggatcctg
gtggccactaatctctttggccgaggcatggacattgagcgggtcaatatcgtcttcaac
tacgacatgccagaagattctgatacctatctgcacagggttgcccgtgctggtaggttt
gggaccaaaggcctggctataacctttgtgtcagacgagaccgatgccaagactctgaac
gatgtgcaggaccgctttgaagtcaacgtggcagagctgccagacgagattgacatctcc
tcttacatcgagcagtccagatga
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