Siniperca chuatsi (mandarin fish): 122869672
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Entry
122869672 CDS
T08948
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122869672
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122869672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
122869672
NCBI-ProteinID:
XP_044038804
LinkDB
All DBs
Position
LG22:9595243..9749286
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AA seq
690 aa
AA seq
DB search
MEIAEARGASKCVEKMEKEVAPQKRQYWRTTVLNIISSLCSVASIAFCILLSINTADIKN
RVVDLESGNGEHTFIRAPGYSMGDFNSLIEQRVDELLSQRSYENFVKIRTARQASPECNC
PPGPPGKRGRRGRNGEPGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGPMGPEGPEG
PKGSFGLPGIPGVDGLKGDVGIPGLDGIPGAKGEMGEQGEKGDMGEDGPKGDMGEKGDAG
SSAAGIKGEPGEPGRSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGD
HGPPGKGERGEIGPAGPKGSQGEAGTPGPKGSKGEFGDKGDLGSIGPRGPPGQKGDQGAT
EIIDYNGNIQEALQKITTITVTGPPGPPGPTGPQGIKGDRGMPGLPGLDGERGYKGSKGD
MGMPGASGEKGATGLPGLPGVNGVKGDKGDSGLPGPQGPSISGAPGPPGPHGPPGPMGPH
GFPGPKGEPGLHGVKGMRGEAGHKGDRGPLGLPGASGLDGKPGIRGTDGPSGPAGPAGPK
GDIGEKGAQGEPGPRGPYGLPGAAGTPGLDGLPGLRGEKGDVGERGEKGEKGKKGKKGPK
GEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaggagcatctaagtgcgtggagaaaatggagaaagaagtg
gcgcctcagaagcgacaatattggcgcacaacagtgctgaacataatctcgtctttatgt
tcagtggcgtccatcgccttctgcattcttctgagcattaacacagctgatattaagaac
cgggttgtggatttggagagtgggaacggcgagcacacctttatccgtgcccctggctac
tccatgggtgattttaattcattaattgaacaaagagtggatgagctgctgtctcagcgc
tcctatgaaaattttgtcaagattcgtactgcaagacaagcatcacctgaatgcaactgc
cctccaggacctccgggaaagcgaggaagaagaggccgcaatggagaacctggacctcct
ggccctccaggtccaaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcggctc
attaagggagatcaagggcaagcaggaccacctgggcctccggggccaccgggccctcct
gggccaagggggcctccaggggacacagggaaagatgggcccagaggtgtacctggttta
ccaggtgatccagggcagcctggagaaacaggacccatgggtcctgaggggccagagggg
ccgaagggttcattcgggcttcctggcatcccaggtgttgatggactgaagggggatgtt
ggcatcccaggattggacggtatcccaggagccaagggtgaaatgggagaacaaggtgaa
aagggtgatatgggtgaagacggaccgaaaggtgatatgggagagaagggagatgcaggc
tcctctgcagcaggcatcaagggtgaacctggagagcctggacgaagtggacataaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctc
ggtccccagggagagccagggcttccaggactcccaggaactaagggtgagagaggcgac
catgggccaccaggaaagggtgaaagaggagagattggacccgctggaccaaagggttca
caaggagaggctggcacacctggtcctaaagggtcaaagggggagtttggagataaagga
gacttgggatctattggcccgagggggccccctgggcagaaaggagaccaaggagccact
gaaatcatcgactacaatggaaacattcaggaggctctacagaagattaccactattaca
gtgacgggtcctcctggacctcctgggccaacaggaccgcagggcataaagggggatcgt
ggcatgcctggtctccctggacttgatggtgaaagaggctacaaaggttccaaaggagac
atgggaatgcccggagcttcaggggaaaaaggggcaactggtttacccggcctacctggt
gtcaatggggtaaaaggggacaagggagattcaggcctacctggtcctcaaggtccttca
atcagcggtgctccagggccaccagggccccatggacccccaggacccatgggcccccat
ggtttccctggaccaaagggggaacctggtttgcatggtgtgaagggaatgcgaggggaa
gcaggacacaaaggggaccgtggaccactgggtctccccggagcctccggcttggacggc
aagcccggaattaggggcacggatgggccttcaggtccagctggtccagctgggccaaag
ggtgacataggtgagaaaggagcacaaggcgagccaggaccaaggggaccttatggactg
cctggagctgctggaacaccaggcttggatgggttgccaggcttaaggggagaaaaaggc
gacgttggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaag
ggcgagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggcccagat
ggattaccaatgcctgggtgctggcagaagtga
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