Siniperca chuatsi (mandarin fish): 122869975
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Entry
122869975 CDS
T08948
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04382
Cornified envelope formation
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04518
Integrin signaling
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122869975 (col4a6)
04518 Integrin signaling
122869975 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122869975 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122869975 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122869975 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122869975 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122869975 (col4a6)
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122869975 (col4a6)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122869975 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122869975
NCBI-ProteinID:
XP_044039404
LinkDB
All DBs
Position
LG22:19180003..19313778
Genome browser
AA seq
1707 aa
AA seq
DB search
MKLLICVIAVAVAVRSTHGGTKLDEPCAGLDCSGGCRCNPEKGSRGRPGPLGEVGQSGPE
GPRGVPGPSGPKGEKGHIGVKGPSGQKGDKGPMGVPGFQGTDGVPGHPGLEGGRGPPGLD
GCNGTRGEPGVPGFGTGLPGFPGLAGPSGPKGQKGEPRYISDNGITSLPGLPGMDGQPGI
RGPDGPSGFPGPRGPDGFPGPPGPPGSPGPMGSQSDGYQGERGDKGDVGLPGDPGQPMIN
GVVEFVGFPKGDKGMQGEPGPKGARGFPGNPGPPGPFGYRGELGEKGIPGYPGARGPPGF
NGPPGAPGQQGYSGNPGFPGQPGYIGPKGDQGDQGLPGPPAYFSDMGTSVQGQPGDPGLN
GLPGRPGDQGAPGFPGSPGQPGTIDFGTGRPGSPGFPGTPGPKGEKGNPGIPSYGSEGIP
GSPGPPGHRGPPGPQGPSSFAVDPCVIYPNGSKGYPGQPGAPGPRGVPGNTGQKGFRGDP
GDCACLGGGSSVLPGLPGPPGTNGSPGFNGRKGEPGDSGSPGFNGIQGLPGRAGERGFSG
RKGEKGASYYPIPGLGVKGELGAPGPTGPTGETGRPGRDGLPGFPGAPGPPGDAGFGTVG
EKGFPGFPGPKGRPGGPGEPGVGYVGTPGYRGEPGEPGIPGLPGQPGLPGPSGENSCGGV
NDAGEGTGQVQPCTVSGEDGDPGFPGLPGQPGPKGQPGFPGGPGRPGFDGAKGERGDPGF
GGQPGPQGFPGPRGDPGVPGVPGQSFDGGRGKDGVPGRPGAKGQPGEVLGATSGAPGQDG
LPGIPGDKGQPGTPGGPGLPGGDGRFGVPGLKGERGVDGYPGITGPPGPPGEPTGGIPGR
PGAPGNQGLGGSPGCEGFPGRKGERGDPGFPGPAGMKGTPGQPGTPGSPGPRGPPGPAGP
GTREGVPGIPGRKGERGLPGLMGFPGLPGRPGSPGFPGGKGLSGGPGRDGSPGRSGNPGT
KGDRGYPGPPGLPSPVIEIDMLEKGEPGSPGSSGLPGFIGTRGDKGLPGLPGRQGLPGRP
GFAEQSKGQPGQPGFPGQPGAPGFPGPKGEAGIMGFPGMSGPRGDDGIPGIPGNPGEFGR
PGGKGLPGDTFGYPGGPGAKGQPGDSGIPGGRGNDGTPGDNGFPGTPGFPGVKGAPGEGG
RPGIMGSLGFPGPKGQSGYPGRRGADGSPGLPGGPGGPGAKGLPGSPGLDGLNGLAGPKG
LPGTPGVTAGGRPGAPGIPGQKGERGVSYPGGPGYPGPKGERGESGGPGLTGFPGLPGPP
GETVKSDIPGPVGDPGLPGLDGEYGFQGPPGPPGPPGPGTAQGDRGDAGLPGFPGSPGRK
GEPGGPGGPGLPGSPGFKGGRGETGFSGGPGLKGFPGDSGYYGNKGSKGLRGRPGAKGIP
GVTVMDPRKPEPLTFGDQGFPGERGAPGGLGEHGQPGMPGRPGPKGRPGPVGKLGRTGSS
GLPGPIGDPGPPGFPGPTGEQGLPGAAGRPGTPGSVGRSHGIGYTLVKHSQDSQVPMCPQ
GMAKLWDGYSLLYVEGQEKAHNQDLGQPGSCLPRFNTIPFLYCSPNEVCYYASRNDKSYW
LSTTASIPMMPVAEGQIQPYISRCSVCEAPSQAVAVHSQDMTIPTCPPGWRSLWIGYSFL
MHTAAGAEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLTTVDPRKEFV
YSPGQETLKGGQERSRVSRCQVCSKLL
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcctgatttgtgtgatagcagtggccgtggcggtgagatctacgcatggaggt
accaagttggacgagccgtgcgcaggcctggactgtagcggaggatgcaggtgcaaccca
gagaaaggcagcaggggtcgtccagggcctctcggtgaagttggtcagagcggaccagaa
gggccacgtggggtcccggggccttcagggcctaaaggagagaagggtcacatcggagtg
aagggaccatctggccagaaaggagacaagggacctatgggcgtcccagggttccaagga
actgatggagtacctggtcaccctggtctggagggcggcagaggaccaccaggactggac
ggttgtaacgggaccagaggagagcctggagtgcctggcttcgggacaggattacctgga
ttccctggacttgctgggccttctgggccaaaggggcagaaaggagagcctcgatacatc
tcggataacggcatcacgagtttaccaggcctacctggaatggacggtcaacctggtatc
agaggtcctgatggtccatctggttttcctggtccgagagggcctgatggattccctggg
ccacctggtcctcccggttccccagggccaatggggagtcaaagtgacgggtatcaagga
gagcgaggagacaagggcgacgtgggcttgcccggtgaccccggccagccaatgatcaat
ggcgttgtggagtttgtgggttttcccaaaggagacaaaggaatgcagggtgaaccaggt
ccaaagggagccagaggattccctggcaatcctggcccacctggacctttcggctatcgt
ggtgaacttggagagaaaggcattcctggataccccggggcaagaggtcctcctggtttt
aacgggcctcctggcgctccaggtcaacagggatactcaggtaacccaggtttccccggg
caaccaggatacataggacccaagggagaccagggagaccagggactaccaggacctcct
gcttactttagtgatatgggcacttccgttcaaggacaaccaggtgacccaggtctcaat
ggcctgcccggtcgccccggtgaccagggagctccaggattcccaggatcaccaggccaa
ccaggaactattgattttggtacaggtcgtcccggatccccaggtttccccgggacccca
ggcccaaagggagagaaaggtaaccctggcataccaagctatggctccgaaggaatccct
ggctcccctggaccccccggacaccgtggccctcctggacctcagggcccttctagcttt
gccgttgatccctgcgtcatctatcccaacgggtccaaaggttaccctggacagcctggg
gcacctggccccagaggagtgccgggtaacacaggacaaaaaggcttcagaggtgatcct
ggcgactgtgcctgcctaggaggtgggtcctctgtgttgcctgggttacctggaccccca
ggaaccaacggcagccccggcttcaatgggcgaaagggtgagcccggtgactccggttca
cccggctttaatggcattcaggggcttcctggtcgtgctggtgaaaggggtttctctggt
cgtaagggagagaagggggcgtcttactaccccatcccgggtttgggggtgaaaggagag
ctcggagctcctggacccacaggacctacaggtgaaactggaagacctggcagagacgga
ctgcctggcttccccggagcccctggacccccaggcgacgctggcttcggcacagttgga
gagaaaggtttcccagggttcccagggcctaagggtcgtcccggcggccctggcgaaccc
ggtgttggctatgtcggaacacccggctatcgcggagagcctggagagcccggtatacct
gggttgccagggcaaccaggtttgcccggaccaagcggtgaaaacagctgtggaggggtt
aatgacgccggagagggaactggccaagtgcaaccttgcaccgtatctggtgaggatgga
gaccccggtttccccggtttacctggacaaccaggtcctaaaggtcagccaggtttccca
ggaggccctggacgtccagggtttgacggtgccaaaggagagagaggagaccccggtttt
ggaggccaacctggaccacaaggtttccctggacccagaggggaccctggagttccagga
gttccaggacagagttttgacggaggcagagggaaggatggtgttccagggcgtcctgga
gccaagggccaacctggagaggtactgggagccacgtctggagctccaggacaggacggt
ttaccagggatccctggagacaagggccagcccgggacaccaggaggacctggattacct
ggtggtgacggacgtttcggtgttcctggactgaagggagagcgcggagtggatggttat
cctggtattaccggccctcctggacctccgggtgagccgactggtggcattcccggtcgg
cctggagctcctggcaaccagggactgggtggatcaccaggctgtgaaggtttccctggt
cggaagggagaaagaggagacccaggttttccagggcctgctggaatgaagggaacccca
ggacagcctggcacccctggatcaccagggccaaggggaccccccggacctgcaggacca
ggaactagagagggagtcccaggaataccaggaaggaaaggtgagagaggtttgccagga
cttatgggtttcccaggactcccaggtcgtcctggaagcccagggtttcctggagggaaa
ggactgtctggagggcctggaagagacggatcgcccggccgttctggaaaccccggaacg
aaaggtgacagaggataccccggtccccccggcttgccctctcctgttattgaaatagat
atgctggagaaaggagaacccggaagccccggaagcagcggccttcctggcttcatcgga
accagaggtgacaagggtctgccaggtctccctggtcgtcagggtctgcctggacgtcct
ggttttgctgaacagagtaaaggacagccgggacagcctgggtttcctgggcaaccagga
gctccaggcttccccgggccgaagggagaagctggaatcatgggattccctggcatgtct
ggaccaaggggtgatgatggtatacctggtatccctggcaaccctggagaatttggtcgg
cctggtggcaaaggtctacccggagatacttttggttatcctggaggtccaggagctaaa
ggccagccaggagattcaggcatccctggtggtcgtggcaatgacggcacccccggtgac
aacggctttccaggcacgccaggtttccctggagtgaagggagctcctggtgaaggaggt
cggcctggaataatgggctcccttggtttccccgggccgaaaggccagtccggctaccca
ggaagaagaggagcagatgggtctcctggtctgcctggaggtcctggaggtcctggagcc
aaaggtttgccgggatcccctggtttggatggacttaatggccttgctgggcctaaaggc
ctccctggaaccccaggtgtgaccgcaggaggtcgcccaggtgcccctggtattccaggg
cagaagggagagagaggcgtttcctatccaggaggcccaggctaccccggaccaaaggga
gagagaggagaatcaggtggtcctggactcacagggttccctggtctgcccggacctcct
ggtgagactgtgaagtcggatattcccggacctgtgggagaccccggcctccctggactg
gatggagagtatggtttccaaggtcctccaggtcctcccgggccgcctggtccaggcaca
gcccagggagaccgaggtgatgccgggctgccgggcttccctggctcccccggcagaaaa
ggagaaccaggaggccccggaggccccggattgcccggcagccccggtttcaaaggagga
cgaggtgagactggcttcagcggaggtcctggtctcaagggtttccctggtgactctggt
tactatggaaacaaaggatccaaaggattacgaggacgtcctggtgctaagggtattcct
ggtgttacagtcatggacccacgcaaaccagaacccctaaccttcggagaccagggcttt
cctggtgaaaggggagcccctggtggcctcggagaacatggtcagcctggaatgcccgga
cgtccaggtcctaagggtcgtcccggtcctgtgggtaagcttggcaggactggatcttct
ggtctgcccggacctattggtgacccaggaccccccggtttccctggacccactggagaa
caaggtctccccggtgcagccggtcgtcccggcactcccggcagcgtcggccgcagtcac
ggcatcggctacactctggtgaagcacagccaggactcccaggtgcccatgtgtcctcag
ggcatggccaagctgtgggacggatacagtctgctgtacgtggagggacaggagaaggca
cacaaccaggaccttggccagccagggtcgtgcctccccaggttcaacaccatccccttc
ctttactgctcccccaacgaggtctgctactacgccagccgcaacgacaaatcctactgg
ctctccacaactgcatccatacccatgatgcctgtggccgaggggcagatacaaccttac
atcagcaggtgttctgtgtgtgaggctccatctcaggccgtggcggtccacagtcaggac
atgaccatccccacctgtcctcccggctggaggagcctctggataggatactccttcctc
atgcacacagcagccggcgcagagggcggcggtcagtccctggtgtctcccggctcctgc
ctggaggatttccgtgcgacaccgttcatcgagtgcaacggggccaagggcacctgccac
tacttcgccaataagtacagcttctggctcaccaccgtggatcccagaaaggagtttgtc
tattcgccaggacaggagaccctgaagggaggccaggagcgctccagagtcagccgctgc
caagtctgcagcaagctcttgtag
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